C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RIKEN cDNA 4932438A13 gene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000152564 4932438A13Rik-001 ENSMUSG00000037270 10090 + 3:36869998-37053033 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartLiverMuscleOvaryPlacentaTestisENSMUST00000152564
Transcript ID Adipose Brain Breast Heart Liver Muscle Ovary Placenta Testis
ENSMUST00000152564 1.629±0.00 1.743±0.51 1.109±0.39 0.911±0.07 0.438±0.00 0.512±0.13 1.461±0.32 2.617±0.02 4.003±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007AC CIL_0007AC_0002 CGP 3:36620482-37053033
CIL_0007AD CIL_0007AD_0002 CGP 3:36863106-37121924

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001558 NAS regulation of cell growth
GO:0003674 ND molecular_function
GO:0005634 NAS nucleus
GO:0006629 NAS lipid metabolic process
GO:0007283 NAS spermatogenesis
GO:0016021 IEA integral component of membrane
GO:0019915 NAS lipid storage
GO:0045444 NAS fat cell differentiation
GO:0051647 NAS nucleus localization
GO:0060612 NAS adipose tissue development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000090000 si:ch211-233a24.2-201 protein_coding Danio_rerio 0 880
ENSDART00000134725 si:ch211-233a24.2-001 protein_coding Danio_rerio 0 880
ENST00000264501 KIAA1109-001 protein_coding Homo_sapiens 0 20230
ENST00000306802 KIAA1109-009 protein_coding Homo_sapiens 0 4409
ENST00000388738 KIAA1109-201 protein_coding Homo_sapiens 0 20240
ENST00000419325 KIAA1109-007 protein_coding Homo_sapiens 0 6665
ENST00000421930 KIAA1109-011 protein_coding Homo_sapiens 0 340
ENST00000424425 KIAA1109-004 protein_coding Homo_sapiens 0 5003
ENST00000438707 KIAA1109-010 protein_coding Homo_sapiens 0 4409
ENST00000442707 KIAA1109-008 protein_coding Homo_sapiens 0 669
ENST00000446180 KIAA1109-006 protein_coding Homo_sapiens 0 5559
ENST00000449251 KIAA1109-003 protein_coding Homo_sapiens 0 560
ENST00000480651 KIAA1109-013 retained_intron Homo_sapiens 0 870
ENST00000482114 KIAA1109-002 retained_intron Homo_sapiens 0 1391
ENST00000483357 KIAA1109-014 processed_transcript Homo_sapiens 0 446
ENST00000491933 KIAA1109-015 retained_intron Homo_sapiens 0 658
ENST00000495260 KIAA1109-005 processed_transcript Homo_sapiens 0 3029

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