C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transforming, acidic coiled-coil containing protein 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000037313 Tacc3 10090 + 5:33658128-33678995 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000074849 Tacc3-001 33658128-33672201 protein_coding
  ENSMUST00000079534 Tacc3-003 33658128-33678995 protein_coding
  ENSMUST00000114426 Tacc3-002 33658586-33672193 protein_coding
  ENSMUST00000138240 Tacc3-005 33669569-33672201 protein_coding
  ENSMUST00000139453 Tacc3-007 33658634-33662015 retained_intron
  ENSMUST00000139888 Tacc3-004 33668724-33678985 protein_coding
  ENSMUST00000152847 Tacc3-006 33658554-33664283 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000074849ENSMUST00000079534ENSMUST00000114426ENSMUST00000138240ENSMUST00000139888
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000074849 0.816±0.05 1.052±0.13 0.675±0.00 1.564±0.44 1.378±0.03 1.737±0.00 0.246±0.25 0.456±0.16 2.368±3.13 0.747±0.30 0.372±0.17 1.239±0.37 N/A 8.528±1.12
ENSMUST00000079534 0.250±0.00 0.312±0.11 0.375±0.00 N/A N/A N/A N/A 0.165±0.00 0.132±0.00 0.673±0.00 0.249±0.00 N/A N/A 1.934±0.11
ENSMUST00000114426 3.309±2.43 N/A 2.261±0.13 13.557±2.72 1.175±0.22 3.856±0.00 0.415±0.09 0.439±0.17 25.807±24.73 1.050±0.39 0.385±0.19 10.923±3.92 29.436±20.93 15.566±10.56
ENSMUST00000138240 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.323±0.00 7.000±0.00 N/A
ENSMUST00000139888 N/A N/A N/A 2.996±0.00 N/A N/A N/A N/A N/A N/A N/A 13.521±0.00 27.192±23.96 26.439±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TX CIL_0007TX_0002 VISTA 5:33275293-33875875
CIL_0003K0 CIL_0003K0_0002 CGP 5:33653216-33678995
CIL_0006V2 CIL_0006V2_0002 CGP 5:33658128-33737068

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000226 IMP microtubule cytoskeleton organization
GO:0001666 IDA response to hypoxia
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005813 IDA centrosome
GO:0008283 IMP cell proliferation
GO:0019904 IPI protein domain specific binding
GO:0021987 IMP cerebral cortex development
GO:0022008 IMP neurogenesis
GO:0022027 IMP interkinetic nuclear migration
GO:0030097 IMP hemopoiesis
GO:0030953 IDA astral microtubule organization
GO:0032886 IMP regulation of microtubule-based process
GO:0042994 IDA cytoplasmic sequestering of transcription factor
GO:0051726 IGI regulation of cell cycle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000005454 tacc3 transforming, acidic coiled-coil containing protein 3 protein_coding Danio_rerio
ENSG00000013810 TACC3 transforming, acidic coiled-coil containing protein 3 protein_coding Homo_sapiens

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