C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006V2_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000013810-ENSG00000068078 CGP 9606 4:1721490-1808872
GeneTranscriptPositionBiotype
ENSG00000013810 (TACC3)
transforming, acidic coiled-coil containing protein 3 		ENST00000313288 (TACC3-001) 1721539-1745171 protein_coding
ENST00000404054 (TACC3-012) 1739351-1742121 retained_intron
ENST00000458173 (TACC3-011) 1723110-1728066 protein_coding
ENST00000466077 (TACC3-007) 1730803-1737645 retained_intron
ENST00000467746 (TACC3-004) 1721535-1728232 nonsense_mediated_decay
ENST00000470136 (TACC3-006) 1728404-1735827 protein_coding
ENST00000470808 (TACC3-008) 1739345-1741294 retained_intron
ENST00000484264 (TACC3-009) 1744439-1745076 retained_intron
ENST00000484651 (TACC3-002) 1721519-1738350 retained_intron
ENST00000485989 (TACC3-003) 1721500-1735747 protein_coding
ENST00000493975 (TACC3-005) 1721785-1728094 protein_coding
ENST00000612220 (TACC3-201) 1721490-1745176 protein_coding
ENST00000617535 (TACC3-202) 1721545-1745168 protein_coding
ENSG00000068078 (FGFR3)
fibroblast growth factor receptor 3 		ENST00000260795 (FGFR3-001) 1793833-1808871 protein_coding
ENST00000340107 (FGFR3-201) 1793312-1808872 protein_coding
ENST00000352904 (FGFR3-002) 1793896-1808871 protein_coding
ENST00000412135 (FGFR3-202) 1793312-1808872 protein_coding
ENST00000440486 (FGFR3-203) 1793312-1808872 protein_coding
ENST00000469068 (FGFR3-005) 1804492-1805859 retained_intron
ENST00000474521 (FGFR3-004) 1801629-1803152 processed_transcript
ENST00000481110 (FGFR3-006) 1793307-1808865 protein_coding
ENST00000507588 (FGFR3-007) 1801462-1803739 protein_coding
ENST00000613647 (FGFR3-204) 1793312-1808872 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_0006V2_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000037313-ENSMUSG00000054252 CGP 10090 5:33658128-33737068
GeneTranscriptPositionBiotype
ENSMUSG00000037313 (Tacc3)
transforming, acidic coiled-coil containing protein 3 		ENSMUST00000074849 (Tacc3-001) 33658128-33672201 protein_coding
ENSMUST00000079534 (Tacc3-003) 33658128-33678995 protein_coding
ENSMUST00000114426 (Tacc3-002) 33658586-33672193 protein_coding
ENSMUST00000138240 (Tacc3-005) 33669569-33672201 protein_coding
ENSMUST00000139453 (Tacc3-007) 33658634-33662015 retained_intron
ENSMUST00000139888 (Tacc3-004) 33668724-33678985 protein_coding
ENSMUST00000152847 (Tacc3-006) 33658554-33664283 protein_coding
ENSMUSG00000054252 (Fgfr3)
fibroblast growth factor receptor 3 		ENSMUST00000067150 (Fgfr3-001) 33721724-33737067 protein_coding
ENSMUST00000087820 (Fgfr3-002) 33722398-33735607 protein_coding
ENSMUST00000114411 (Fgfr3-201) 33721724-33737068 protein_coding
ENSMUST00000132724 (Fgfr3-006) 33729964-33733283 retained_intron
ENSMUST00000134610 (Fgfr3-003) 33723004-33732790 retained_intron
ENSMUST00000142860 (Fgfr3-004) 33734605-33735564 retained_intron
ENSMUST00000152661 (Fgfr3-005) 33733692-33734913 retained_intron
ENSMUST00000155002 (Fgfr3-007) 33723772-33729850 protein_coding
ENSMUST00000164207 (Fgfr3-008) 33721791-33737063 protein_coding
ENSMUST00000169212 (Fgfr3-202) 33721724-33737068 protein_coding
ENSMUST00000171509 (Fgfr3-203) 33722306-33737068 protein_coding
ENSMUST00000181298 (Fgfr3-009) 33729738-33732743 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006V2_0001ENSG00000013810ENST00000313288ENST00000404054ENST00000458173ENST00000466077ENST00000467746ENST00000470136ENST00000470808ENST00000484264ENST00000484651ENST00000485989ENST00000493975ENST00000612220ENST00000617535ENSG00000068078ENST00000260795ENST00000340107ENST00000352904ENST00000412135ENST00000440486ENST00000469068ENST00000474521ENST00000481110ENST00000507588ENST00000613647CIL_0006V2_0002ENSMUSG00000037313ENSMUST00000074849ENSMUST00000079534ENSMUST00000114426ENSMUST00000138240ENSMUST00000139453ENSMUST00000139888ENSMUST00000152847ENSMUSG00000054252ENSMUST00000067150ENSMUST00000087820ENSMUST00000114411ENSMUST00000132724ENSMUST00000134610ENSMUST00000142860ENSMUST00000152661ENSMUST00000155002ENSMUST00000164207ENSMUST00000169212ENSMUST00000171509ENSMUST00000181298
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006V2_0001ENSG00000013810ENST00000313288ENST00000404054ENST00000458173ENST00000467746ENST00000470136ENST00000470808ENST00000484264ENST00000484651ENST00000485989ENST00000493975ENST00000617535ENSG00000068078ENST00000260795ENST00000340107ENST00000352904ENST00000412135ENST00000440486ENST00000469068ENST00000474521ENST00000481110ENST00000613647CIL_0006V2_0002ENSMUSG00000037313ENSMUST00000074849ENSMUST00000079534ENSMUST00000114426ENSMUST00000138240ENSMUST00000139888ENSMUSG00000054252ENSMUST00000067150ENSMUST00000087820ENSMUST00000114411ENSMUST00000134610ENSMUST00000152661ENSMUST00000164207ENSMUST00000169212ENSMUST00000171509
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000013810 ENST00000313288 0.992±0.00 4.584±0.00 N/A 0.434±0.00 0.998±0.00 0.442±0.00 0.603±0.00 N/A N/A 0.345±0.10 N/A 6.110±5.94 10.702±2.40 40.844±19.36
ENST00000404054 N/A N/A N/A N/A N/A N/A N/A 0.207±0.00 0.150±0.00 0.568±0.00 0.044±0.00 N/A N/A N/A
ENST00000458173 N/A N/A N/A 0.217±0.00 1.169±0.00 N/A N/A 1.212±0.00 0.268±0.00 1.065±0.00 N/A 1.155±0.00 N/A N/A
ENST00000466077 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467746 N/A N/A 0.915±0.00 N/A N/A N/A N/A 0.291±0.00 N/A N/A N/A N/A N/A N/A
ENST00000470136 N/A N/A N/A 0.238±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470808 N/A N/A N/A N/A N/A N/A N/A N/A 0.336±0.00 N/A N/A 0.514±0.00 N/A N/A
ENST00000484264 3.773±0.00 12.486±0.00 0.573±0.00 N/A 2.283±0.00 2.471±0.00 1.481±0.00 2.015±0.00 0.247±0.00 3.134±0.00 0.392±0.00 N/A N/A N/A
ENST00000484651 N/A N/A N/A N/A N/A N/A 0.249±0.00 0.187±0.00 N/A N/A N/A 0.248±0.00 N/A N/A
ENST00000485989 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.190±0.00 N/A N/A N/A
ENST00000493975 N/A N/A N/A N/A N/A 1.498±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000612220 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617535 N/A N/A N/A 0.125±0.00 N/A N/A N/A N/A N/A N/A 0.059±0.00 2.245±0.00 N/A N/A
ENSG00000068078 ENST00000260795 N/A 0.656±0.00 0.971±0.00 24.377±17.28 N/A 0.415±0.00 N/A N/A N/A N/A N/A 0.256±0.00 3.960±1.21 10.740±4.80
ENST00000340107 0.142±0.00 N/A 0.915±0.00 N/A 0.436±0.00 0.347±0.00 0.085±0.00 2.353±0.07 3.042±2.72 1.866±1.47 N/A 1.619±1.47 N/A N/A
ENST00000352904 N/A N/A N/A N/A N/A 0.453±0.00 0.068±0.00 0.649±0.00 N/A N/A 0.106±0.01 0.947±0.47 3.705±0.00 2.270±0.00
ENST00000412135 N/A N/A N/A N/A N/A N/A N/A 0.476±0.00 N/A N/A N/A N/A N/A N/A
ENST00000440486 N/A N/A N/A N/A N/A N/A N/A 1.244±0.00 N/A N/A N/A N/A N/A N/A
ENST00000469068 N/A N/A N/A N/A N/A N/A 0.332±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000474521 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.985±0.00 N/A N/A
ENST00000481110 N/A 0.494±0.00 N/A 1.285±0.00 0.115±0.00 0.112±0.00 N/A N/A N/A 0.304±0.00 N/A N/A N/A N/A
ENST00000507588 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613647 N/A N/A N/A N/A N/A 0.171±0.00 N/A 1.221±0.00 N/A N/A N/A 0.163±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000037313 ENSMUST00000074849 0.816±0.05 1.052±0.13 0.675±0.00 1.564±0.44 1.378±0.03 1.737±0.00 0.246±0.25 0.456±0.16 2.368±3.13 0.747±0.30 0.372±0.17 1.239±0.37 N/A 8.528±1.12
ENSMUST00000079534 0.250±0.00 0.312±0.11 0.375±0.00 N/A N/A N/A N/A 0.165±0.00 0.132±0.00 0.673±0.00 0.249±0.00 N/A N/A 1.934±0.11
ENSMUST00000114426 3.309±2.43 N/A 2.261±0.13 13.557±2.72 1.175±0.22 3.856±0.00 0.415±0.09 0.439±0.17 25.807±24.73 1.050±0.39 0.385±0.19 10.923±3.92 29.436±20.93 15.566±10.56
ENSMUST00000138240 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.323±0.00 7.000±0.00 N/A
ENSMUST00000139453 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139888 N/A N/A N/A 2.996±0.00 N/A N/A N/A N/A N/A N/A N/A 13.521±0.00 27.192±23.96 26.439±0.00
ENSMUST00000152847 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000054252 ENSMUST00000067150 0.607±0.00 0.803±0.32 N/A 10.044±4.77 0.688±0.00 N/A 1.334±0.29 4.608±0.00 1.158±0.23 N/A 0.241±0.00 1.737±0.18 N/A 0.542±0.15
ENSMUST00000087820 1.281±0.00 N/A N/A N/A N/A N/A 0.903±0.00 N/A N/A N/A 0.343±0.00 1.330±0.00 N/A 0.485±0.00
ENSMUST00000114411 N/A N/A 6.979±1.68 N/A N/A 7.476±2.16 N/A N/A 2.124±0.00 N/A N/A 1.312±0.00 0.973±0.00 N/A
ENSMUST00000132724 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134610 N/A 0.298±0.01 N/A N/A 0.758±0.29 6.591±1.31 1.200±0.00 6.404±1.43 1.888±1.47 29.163±0.16 0.189±0.00 2.084±0.68 N/A 0.438±0.00
ENSMUST00000142860 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152661 N/A N/A N/A 100.571±0.00 N/A N/A N/A N/A N/A N/A N/A 9.942±0.00 3.251±0.34 1.633±0.00
ENSMUST00000155002 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164207 1.952±0.53 0.590±0.29 N/A 6.534±0.79 1.201±0.37 4.293±0.57 0.728±0.16 7.062±1.73 1.145±0.96 32.732±4.27 0.230±0.00 2.315±1.19 1.234±0.60 0.929±0.00
ENSMUST00000169212 N/A N/A N/A 2.443±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.583±0.11
ENSMUST00000171509 0.554±0.00 N/A 5.211±2.06 9.536±0.00 2.126±0.30 12.917±1.53 0.481±0.00 7.385±2.58 4.854±3.72 26.388±1.34 0.237±0.03 1.602±0.50 1.932±1.02 0.080±0.00
ENSMUST00000181298 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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