C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transforming, acidic coiled-coil containing protein 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000114426 Tacc3-002 ENSMUSG00000037313 10090 + 5:33658586-33672193 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000114426
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000114426 3.309±2.43 2.261±0.13 13.557±2.72 1.175±0.22 3.856±0.00 0.415±0.09 0.439±0.17 25.807±24.73 1.050±0.39 0.385±0.19 10.923±3.92 29.436±20.93 15.566±10.56

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TX CIL_0007TX_0002 VISTA 5:33275293-33875875
CIL_0003K0 CIL_0003K0_0002 CGP 5:33653216-33678995
CIL_0006V2 CIL_0006V2_0002 CGP 5:33658128-33737068

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000226 IMP microtubule cytoskeleton organization
GO:0001666 IDA response to hypoxia
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005813 IDA centrosome
GO:0008283 IMP cell proliferation
GO:0019904 IPI protein domain specific binding
GO:0021987 IMP cerebral cortex development
GO:0022008 IMP neurogenesis
GO:0022027 IMP interkinetic nuclear migration
GO:0030097 IMP hemopoiesis
GO:0030953 IDA astral microtubule organization
GO:0032886 IMP regulation of microtubule-based process
GO:0042994 IDA cytoplasmic sequestering of transcription factor
GO:0051726 IGI regulation of cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000313288 TACC3-001 protein_coding Homo_sapiens 0 418
ENST00000466077 TACC3-007 retained_intron Homo_sapiens 1e-34 150
ENST00000470136 TACC3-006 protein_coding Homo_sapiens 4e-25 119
ENST00000484651 TACC3-002 retained_intron Homo_sapiens 5e-35 154
ENST00000485989 TACC3-003 protein_coding Homo_sapiens 4e-25 119
ENST00000612220 TACC3-201 protein_coding Homo_sapiens 0 418
ENST00000617535 TACC3-202 protein_coding Homo_sapiens 0 418

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