C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: UV stimulated scaffold protein A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000185821 Uvssa-004 ENSMUSG00000037355 10090 + 5:33378772-33419754 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverMuscleOvaryPlacentaTestisENSMUST00000185821
Transcript ID Brain Liver Muscle Ovary Placenta Testis
ENSMUST00000185821 1.663±0.00 0.277±0.05 0.372±0.08 2.200±0.90 2.381±0.05 1.416±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TX CIL_0007TX_0002 VISTA 5:33275293-33875875
CIL_0006LM CIL_0006LM_0002 CGP 5:33335572-33419754

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000993 ISS RNA polymerase II core binding
GO:0005694 ISS chromosome
GO:0006283 ISS transcription-coupled nucleotide-excision repair
GO:0009411 ISS response to UV
GO:0016567 ISS protein ubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264065 DNAJC10-001 protein_coding Homo_sapiens 0.00003 58
ENST00000264169 ORC4-201 protein_coding Homo_sapiens 0.00000000003 77
ENST00000309733 C4orf32-001 protein_coding Homo_sapiens 0.00000000003 77
ENST00000310613 SULT1B1-001 protein_coding Homo_sapiens 0.00000000003 77
ENST00000389851 UVSSA-001 protein_coding Homo_sapiens 0 1177
ENST00000392857 ORC4-001 protein_coding Homo_sapiens 0.00000000003 77
ENST00000469971 TMEM182-006 processed_transcript Homo_sapiens 0.000000000003 77
ENST00000481617 TBC1D8B-003 protein_coding Homo_sapiens 0.00000000002 77
ENST00000489060 TMEM45A-007 retained_intron Homo_sapiens 0.00000000002 77
ENST00000507531 UVSSA-003 protein_coding Homo_sapiens 0 1179
ENST00000511216 UVSSA-002 protein_coding Homo_sapiens 0 1177
ENST00000535373 ORC4-202 protein_coding Homo_sapiens 0.00000000003 77
ENST00000536575 ORC4-203 protein_coding Homo_sapiens 0.00000000002 77
ENST00000540442 ORC4-204 protein_coding Homo_sapiens 0.00000000003 77

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