C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: UV stimulated scaffold protein A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000087864 Uvssa-001 ENSMUSG00000037355 10090 + 5:33378696-33419754 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000087864
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000087864 2.129±1.10 1.468±0.48 2.029±0.05 1.450±0.13 1.011±0.13 0.770±0.00 0.569±0.15 2.029±0.55 1.302±0.41 2.470±0.69 0.365±0.16 2.037±1.20 0.923±0.28 0.925±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007TX CIL_0007TX_0002 VISTA 5:33275293-33875875
CIL_0006LM CIL_0006LM_0002 CGP 5:33335572-33419754

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000993 ISS RNA polymerase II core binding
GO:0005515 IEA protein binding
GO:0005694 ISS chromosome
GO:0006283 ISS transcription-coupled nucleotide-excision repair
GO:0009411 ISS response to UV
GO:0016567 ISS protein ubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264065 DNAJC10-001 protein_coding Homo_sapiens 0.00003 58
ENST00000264169 ORC4-201 protein_coding Homo_sapiens 0.00000000003 77
ENST00000309733 C4orf32-001 protein_coding Homo_sapiens 0.00000000003 77
ENST00000310613 SULT1B1-001 protein_coding Homo_sapiens 0.00000000003 77
ENST00000389851 UVSSA-001 protein_coding Homo_sapiens 0 1181
ENST00000392857 ORC4-001 protein_coding Homo_sapiens 0.00000000003 77
ENST00000469971 TMEM182-006 processed_transcript Homo_sapiens 0.000000000003 77
ENST00000481617 TBC1D8B-003 protein_coding Homo_sapiens 0.00000000002 77
ENST00000489060 TMEM45A-007 retained_intron Homo_sapiens 0.00000000002 77
ENST00000507531 UVSSA-003 protein_coding Homo_sapiens 0 1177
ENST00000511216 UVSSA-002 protein_coding Homo_sapiens 0 1177
ENST00000535373 ORC4-202 protein_coding Homo_sapiens 0.00000000003 77
ENST00000536575 ORC4-203 protein_coding Homo_sapiens 0.00000000002 77
ENST00000540442 ORC4-204 protein_coding Homo_sapiens 0.00000000003 77

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