C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tRNA methyltransferase 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000039554 Trmt6-001 ENSMUSG00000037376 10090 - 2:132804207-132816054 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000039554
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000039554 2.530±0.95 1.168±0.30 4.197±1.18 3.796±2.02 1.518±0.49 1.153±0.45 0.973±0.05 2.178±0.57 3.932±3.16 1.325±0.27 2.341±0.71 2.014±1.46 7.240±2.43 1.956±0.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002HP CIL_0002HP_0002 CGP 2:132781278-132816055
CIL_0002W4 CIL_0002W4_0002 CGP 2:132804207-132844197

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003743 IEA translation initiation factor activity
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006413 IEA translational initiation
GO:0006446 IEA regulation of translational initiation
GO:0008033 IEA tRNA processing
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000203001 TRMT6-001 protein_coding Homo_sapiens 0 1631
ENST00000453074 TRMT6-201 protein_coding Homo_sapiens 0 1247
ENST00000466974 TRMT6-002 processed_transcript Homo_sapiens 0 1219
ENST00000473131 TRMT6-003 processed_transcript Homo_sapiens 0 963
ENST00000493972 TRMT6-004 processed_transcript Homo_sapiens 0 617

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