C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: THO complex 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000047037 Thoc2-001 ENSMUSG00000037475 10090 - X:41794991-41911901 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000047037
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000047037 1.765±0.24 0.868±0.38 4.082±0.36 4.900±2.08 1.796±0.71 0.911±0.36 1.266±0.42 1.001±0.38 2.015±1.50 1.661±0.55 1.212±0.25 3.125±3.26 5.386±1.92 0.859±0.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001U7 CIL_0001U7_0002 CGP X:41400854-41920674

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000902 IMP cell morphogenesis
GO:0001824 IMP blastocyst development
GO:0003729 IMP mRNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0010468 IMP regulation of gene expression
GO:0010793 IMP regulation of mRNA export from nucleus
GO:0017145 IMP stem cell division
GO:0051028 IEA mRNA transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000245838 THOC2-201 protein_coding Homo_sapiens 0 7068
ENST00000281092 FER-001 protein_coding Homo_sapiens 0 486
ENST00000355725 THOC2-001 protein_coding Homo_sapiens 0 7068
ENST00000416618 THOC2-014 protein_coding Homo_sapiens 0 791
ENST00000432353 THOC2-010 nonsense_mediated_decay Homo_sapiens 0 1303
ENST00000433883 THOC2-017 nonsense_mediated_decay Homo_sapiens 0 1253
ENST00000436391 FERP1-001 processed_pseudogene Homo_sapiens 0 545
ENST00000438358 THOC2-008 protein_coding Homo_sapiens 0 1098
ENST00000438717 FER-201 protein_coding Homo_sapiens 0 486
ENST00000441692 THOC2-009 protein_coding Homo_sapiens 0 1306
ENST00000448128 THOC2-003 protein_coding Homo_sapiens 0 867
ENST00000455053 THOC2-013 protein_coding Homo_sapiens 0 702
ENST00000459945 THOC2-004 retained_intron Homo_sapiens 0 496
ENST00000464161 THOC2-005 retained_intron Homo_sapiens 0 592
ENST00000464604 THOC2-011 retained_intron Homo_sapiens 9e-27 124
ENST00000464982 THOC2-006 retained_intron Homo_sapiens 0 324
ENST00000464992 THOC2-007 retained_intron Homo_sapiens 0 612
ENST00000491737 THOC2-020 protein_coding Homo_sapiens 0 6530
ENST00000492203 THOC2-015 processed_transcript Homo_sapiens 0 309
ENST00000496830 THOC2-012 retained_intron Homo_sapiens 0 424
ENST00000497887 THOC2-018 processed_transcript Homo_sapiens 0 763
ENST00000504143 FER-008 nonsense_mediated_decay Homo_sapiens 0 486
ENST00000513777 FER-007 processed_transcript Homo_sapiens 0 289
ENST00000618150 THOC2-202 protein_coding Homo_sapiens 0 2420
ENST00000618353 FER-202 protein_coding Homo_sapiens 0 486

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