C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polycystic kidney disease 2-like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000037578 Pkd2l1 10090 - 19:44147637-44192442 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000042026 Pkd2l1-001 44147637-44192442 protein_coding
  ENSMUST00000161357 Pkd2l1-002 44147638-44192442 retained_intron

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000042026ENSMUST00000161357
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000042026 0.017±0.00 0.055±0.03 0.013±0.01 0.154±0.00 0.036±0.02 0.051±0.02 0.008±0.00 0.006±0.00 0.031±0.01 0.014±0.00 0.095±0.04 0.264±0.22 2.501±1.52
ENSMUST00000161357 0.083±0.00 N/A N/A 0.010±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.148±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005E2 CIL_0005E2_0002 CGP 19:44139266-44192442
CIL_0005E3 CIL_0005E3_0002 CGP 19:44147637-44244016

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001581 IDA detection of chemical stimulus involved in sensory perception of sour taste
GO:0005227 IEA calcium activated cation channel activity
GO:0005261 IPI cation channel activity
GO:0005262 IBA calcium channel activity
GO:0005272 IEA sodium channel activity
GO:0005509 IDA calcium ion binding
GO:0005515 IPI protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0005886 IPI plasma membrane
GO:0006812 IDA cation transport
GO:0007224 IMP smoothened signaling pathway
GO:0008092 IEA cytoskeletal protein binding
GO:0008324 IDA cation transmembrane transporter activity
GO:0009986 IDA cell surface
GO:0015269 IEA calcium-activated potassium channel activity
GO:0031513 ISS nonmotile primary cilium
GO:0033040 IDA sour taste receptor activity
GO:0034704 IMP calcium channel complex
GO:0035725 IEA sodium ion transmembrane transport
GO:0042802 IPI identical protein binding
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0050915 IEA sensory perception of sour taste
GO:0050982 IBA detection of mechanical stimulus
GO:0051371 IEA muscle alpha-actinin binding
GO:0051393 IEA alpha-actinin binding
GO:0070207 ISS protein homotrimerization
GO:0070588 IEA calcium ion transmembrane transport
GO:0071468 IDA cellular response to acidic pH
GO:0071805 IEA potassium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000022503 pkd2l1 polycystic kidney disease 2-like 1 protein_coding Danio_rerio
ENSG00000107593 PKD2L1 polycystic kidney disease 2-like 1 protein_coding Homo_sapiens

Loading