C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polycystic kidney disease 2-like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000107593 PKD2L1 9606 - 10:100288154-100330486 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000318222 PKD2L1-001 100288154-100330486 protein_coding
  ENST00000465680 PKD2L1-002 100288160-100329972 protein_coding
  ENST00000528248 PKD2L1-004 100288396-100329940 nonsense_mediated_decay
  ENST00000532547 PKD2L1-003 100299635-100330264 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000318222ENST00000465680ENST00000528248ENST00000532547
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000318222 N/A N/A 0.216±0.00 N/A N/A N/A N/A N/A N/A N/A 0.042±0.00 N/A 0.295±0.00
ENST00000465680 N/A 0.315±0.00 N/A N/A 0.809±0.00 N/A N/A 0.178±0.00 N/A N/A 0.850±0.17 0.140±0.01 0.156±0.00
ENST00000528248 0.061±0.00 0.067±0.00 0.272±0.07 0.029±0.01 N/A 0.030±0.02 0.203±0.04 0.007±0.00 0.035±0.00 0.056±0.00 0.446±0.33 0.068±0.05 0.247±0.01
ENST00000532547 N/A N/A 0.449±0.00 N/A N/A N/A N/A N/A 0.153±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QB CIL_0007QB_0001 VISTA 10:100185085-100786577
CIL_0005E2 CIL_0005E2_0001 CGP 10:100273280-100330486
CIL_0005E3 CIL_0005E3_0001 CGP 10:100288154-100364834

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001581 ISS detection of chemical stimulus involved in sensory perception of sour taste
GO:0005216 IEA ion channel activity
GO:0005227 IDA calcium activated cation channel activity
GO:0005261 IDA cation channel activity
GO:0005262 IBA calcium channel activity
GO:0005272 IDA sodium channel activity
GO:0005509 ISS calcium ion binding
GO:0005515 IPI protein binding
GO:0005783 ISS endoplasmic reticulum
GO:0005886 IMP plasma membrane
GO:0006811 IEA ion transport
GO:0006812 ISS cation transport
GO:0007224 ISS smoothened signaling pathway
GO:0008092 IPI cytoskeletal protein binding
GO:0008324 ISS cation transmembrane transporter activity
GO:0009986 ISS cell surface
GO:0015269 IDA calcium-activated potassium channel activity
GO:0016020 IDA:IEA membrane
GO:0016021 NAS integral component of membrane
GO:0031513 IDA nonmotile primary cilium
GO:0033040 ISS sour taste receptor activity
GO:0034704 IDA calcium channel complex
GO:0035725 IDA sodium ion transmembrane transport
GO:0042802 ISS identical protein binding
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0050915 IMP sensory perception of sour taste
GO:0050982 IBA detection of mechanical stimulus
GO:0051371 IPI muscle alpha-actinin binding
GO:0051393 IPI alpha-actinin binding
GO:0055085 IEA transmembrane transport
GO:0070207 IDA protein homotrimerization
GO:0070588 IEA calcium ion transmembrane transport
GO:0071468 ISS cellular response to acidic pH
GO:0071805 IDA potassium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000022503 pkd2l1 polycystic kidney disease 2-like 1 protein_coding Danio_rerio
ENSMUSG00000037578 Pkd2l1 polycystic kidney disease 2-like 1 protein_coding Mus_musculus

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