C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polycystic kidney disease 2-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000042026 Pkd2l1-001 ENSMUSG00000037578 10090 - 19:44147637-44192442 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000042026
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000042026 0.017±0.00 0.055±0.03 0.013±0.01 0.154±0.00 0.036±0.02 0.051±0.02 0.008±0.00 0.006±0.00 0.031±0.01 0.014±0.00 0.095±0.04 0.264±0.22 2.501±1.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005E2 CIL_0005E2_0002 CGP 19:44139266-44192442
CIL_0005E3 CIL_0005E3_0002 CGP 19:44147637-44244016

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001581 IDA detection of chemical stimulus involved in sensory perception of sour taste
GO:0005227 IEA calcium activated cation channel activity
GO:0005261 IPI cation channel activity
GO:0005262 IBA calcium channel activity
GO:0005272 IEA sodium channel activity
GO:0005509 IDA calcium ion binding
GO:0005515 IPI protein binding
GO:0005783 IDA endoplasmic reticulum
GO:0005886 IPI plasma membrane
GO:0006812 IDA cation transport
GO:0007224 IMP smoothened signaling pathway
GO:0008092 IEA cytoskeletal protein binding
GO:0008324 IDA cation transmembrane transporter activity
GO:0009986 IDA cell surface
GO:0015269 IEA calcium-activated potassium channel activity
GO:0031513 ISS nonmotile primary cilium
GO:0033040 IDA sour taste receptor activity
GO:0034704 IMP calcium channel complex
GO:0035725 IEA sodium ion transmembrane transport
GO:0042802 IPI identical protein binding
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0050915 IEA sensory perception of sour taste
GO:0050982 IBA detection of mechanical stimulus
GO:0051371 IEA muscle alpha-actinin binding
GO:0051393 IEA alpha-actinin binding
GO:0070207 ISS protein homotrimerization
GO:0070588 IEA calcium ion transmembrane transport
GO:0071468 IDA cellular response to acidic pH
GO:0071805 IEA potassium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000318222 PKD2L1-001 protein_coding Homo_sapiens 0 2529
ENST00000528248 PKD2L1-004 nonsense_mediated_decay Homo_sapiens 0 2394

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