C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: BCL2-associated transcription factor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000037608 Bclaf1 10090 + 10:20312469-20344613 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000043881 Bclaf1-002 20312484-20342499 protein_coding
  ENSMUST00000092678 Bclaf1-201 20312469-20342501 protein_coding
  ENSMUST00000185800 Bclaf1-008 20312537-20340263 protein_coding
  ENSMUST00000186100 Bclaf1-001 20312472-20340266 nonsense_mediated_decay
  ENSMUST00000187338 Bclaf1-006 20312528-20322595 retained_intron
  ENSMUST00000188546 Bclaf1-004 20333254-20340206 retained_intron
  ENSMUST00000189158 Bclaf1-007 20326045-20332258 nonsense_mediated_decay
  ENSMUST00000190156 Bclaf1-009 20312529-20340262 nonsense_mediated_decay
  ENSMUST00000191143 Bclaf1-003 20329049-20333890 retained_intron
  ENSMUST00000191438 Bclaf1-005 20323720-20344613 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043881ENSMUST00000092678ENSMUST00000185800ENSMUST00000186100ENSMUST00000188546ENSMUST00000190156ENSMUST00000191438
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043881 4.222±2.29 2.812±0.00 18.645±1.43 17.326±8.93 3.265±0.45 2.272±1.18 2.712±1.02 2.400±1.34 6.770±4.39 6.144±1.70 4.045±1.30 12.034±8.34 7.078±2.57 3.100±1.36
ENSMUST00000092678 5.836±2.51 4.936±1.74 N/A N/A 6.847±1.81 3.596±1.98 2.538±1.10 2.633±1.31 3.753±1.85 5.130±1.48 1.861±0.48 10.900±3.43 4.026±1.14 1.626±0.31
ENSMUST00000185800 N/A N/A N/A 9.287±0.00 4.401±0.00 N/A N/A N/A 7.827±0.00 N/A 1.844±0.20 14.927±3.15 13.731±9.56 5.779±3.76
ENSMUST00000186100 4.071±0.59 N/A N/A 5.571±0.00 N/A N/A 1.875±0.00 N/A 8.943±3.22 N/A N/A 11.417±0.00 6.776±3.39 2.876±1.35
ENSMUST00000188546 N/A N/A N/A 57.089±0.00 N/A N/A N/A N/A N/A N/A N/A 116.381±0.00 65.846±22.87 92.780±0.00
ENSMUST00000190156 N/A N/A N/A N/A N/A N/A N/A N/A 4.023±0.00 N/A N/A N/A N/A N/A
ENSMUST00000191438 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 21.249±0.00 17.205±8.21 6.160±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000879 CIL_000879_0002 VISTA 10:20184902-20788767

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006915 IEA apoptotic process
GO:0043065 IEA positive regulation of apoptotic process
GO:0043620 IEA regulation of DNA-templated transcription in response to stress
GO:0044822 IEA poly(A) RNA binding
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:2000144 IEA positive regulation of DNA-templated transcription, initiation
GO:2001022 IEA positive regulation of response to DNA damage stimulus
GO:2001244 IEA positive regulation of intrinsic apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000029363 BCLAF1 BCL2-associated transcription factor 1 protein_coding Homo_sapiens

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