C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ARP5 actin-related protein 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000037761 Actr5 10090 + 2:158624888-158639211 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000045644 Actr5-001 158624888-158639211 protein_coding
  ENSMUST00000125390 Actr5-005 158624888-158629157 retained_intron
  ENSMUST00000142531 Actr5-004 158624888-158639198 retained_intron
  ENSMUST00000183586 Actr5-003 158631629-158636697 processed_transcript
  ENSMUST00000183731 Actr5-002 158624888-158639198 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000045644ENSMUST00000142531ENSMUST00000183586ENSMUST00000183731
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000045644 1.261±0.29 1.232±0.00 1.303±0.12 2.639±0.23 1.498±0.54 1.454±0.39 0.603±0.29 1.490±0.27 1.395±0.77 1.762±0.79 0.698±0.30 2.158±0.81 2.194±0.56 2.058±0.31
ENSMUST00000142531 1.086±0.40 2.066±0.41 1.520±0.31 1.402±0.00 1.710±0.62 1.233±0.45 0.582±0.13 0.779±0.26 0.721±0.28 1.768±0.12 0.247±0.08 2.229±0.73 1.178±0.11 1.090±0.15
ENSMUST00000183586 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.654±0.00 N/A
ENSMUST00000183731 N/A 0.553±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081Y CIL_00081Y_0002 VISTA 2:158139041-158740388
CIL_0004NU CIL_0004NU_0002 CGP 2:158610767-158639211
CIL_0004EB CIL_0004EB_0002 CGP 2:158624888-158766334

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006281 IEA DNA repair
GO:0006302 IEA double-strand break repair
GO:0006310 IEA DNA recombination
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0031011 IEA Ino80 complex
GO:0070914 IEA UV-damage excision repair

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000012995 actr5 ARP5 actin-related protein 5 homolog protein_coding Danio_rerio
ENSG00000101442 ACTR5 ARP5 actin-related protein 5 homolog (yeast) protein_coding Homo_sapiens

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