C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PHD finger protein 12
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000037791 Phf12 10090 + 11:77982754-78030539 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000049167 Phf12-001 77982802-78030539 protein_coding
  ENSMUST00000108360 Phf12-002 77982754-78026214 protein_coding
  ENSMUST00000123662 Phf12-006 78023719-78026016 nonsense_mediated_decay
  ENSMUST00000125079 Phf12-008 78028110-78029577 retained_intron
  ENSMUST00000131680 Phf12-004 78023696-78028847 nonsense_mediated_decay
  ENSMUST00000141620 Phf12-007 78023595-78025961 retained_intron
  ENSMUST00000153428 Phf12-003 78023381-78026192 protein_coding
  ENSMUST00000153747 Phf12-005 78023629-78026182 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000049167ENSMUST00000108360ENSMUST00000125079ENSMUST00000153428
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000049167 9.816±1.82 8.211±1.54 14.322±4.39 15.275±7.67 9.937±3.90 11.451±1.86 4.614±0.69 6.629±0.80 6.428±3.72 11.869±0.42 2.820±0.94 9.013±2.59 9.279±6.21 6.821±2.97
ENSMUST00000108360 4.941±1.42 11.897±0.00 3.787±0.00 N/A N/A 4.470±0.00 N/A 3.139±0.48 2.270±0.00 5.965±1.59 1.500±0.09 7.614±1.80 N/A 2.326±0.13
ENSMUST00000125079 N/A N/A N/A 26.604±0.00 N/A N/A N/A N/A N/A N/A N/A 36.781±0.00 27.031±0.00 12.622±0.00
ENSMUST00000153428 N/A N/A N/A N/A 15.184±0.00 N/A N/A N/A 4.364±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006M6 CIL_0006M6_0002 CGP 11:77930800-78030539
CIL_0006M3 CIL_0006M3_0002 CGP 11:77982754-78037866

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 ISO negative regulation of transcription from RNA polymerase II promoter
GO:0001106 ISO RNA polymerase II transcription corepressor activity
GO:0001222 IPI transcription corepressor binding
GO:0005634 ISS nucleus
GO:0005730 IEA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0016580 ISO Sin3 complex
GO:0017053 ISS transcriptional repressor complex
GO:0035091 IEA phosphatidylinositol binding
GO:0045892 ISS negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074303 phf12a PHD finger protein 12a protein_coding Danio_rerio
ENSDARG00000075509 phf12b PHD finger protein 12b protein_coding Danio_rerio
ENSG00000109118 PHF12 PHD finger protein 12 protein_coding Homo_sapiens

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