C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PHD finger protein 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000049167 Phf12-001 ENSMUSG00000037791 10090 + 11:77982802-78030539 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000049167
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000049167 9.816±1.82 8.211±1.54 14.322±4.39 15.275±7.67 9.937±3.90 11.451±1.86 4.614±0.69 6.629±0.80 6.428±3.72 11.869±0.42 2.820±0.94 9.013±2.59 9.279±6.21 6.821±2.97

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006M6 CIL_0006M6_0002 CGP 11:77930800-78030539
CIL_0006M3 CIL_0006M3_0002 CGP 11:77982754-78037866

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISO negative regulation of transcription from RNA polymerase II promoter
GO:0001106 ISO RNA polymerase II transcription corepressor activity
GO:0001222 IPI transcription corepressor binding
GO:0005634 ISS nucleus
GO:0005730 IEA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0016580 ISO Sin3 complex
GO:0017053 ISS transcriptional repressor complex
GO:0035091 IEA phosphatidylinositol binding
GO:0045892 ISS negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000268756 PHF12-002 protein_coding Homo_sapiens 0 3725
ENST00000332830 PHF12-001 protein_coding Homo_sapiens 0 6333
ENST00000378879 PHF12-007 nonsense_mediated_decay Homo_sapiens 0 3550
ENST00000483934 PHF12-003 processed_transcript Homo_sapiens 0 571
ENST00000577226 PHF12-004 protein_coding Homo_sapiens 0 3928
ENST00000578900 PHF12-015 protein_coding Homo_sapiens 0 704
ENST00000579036 PHF12-018 protein_coding Homo_sapiens 0 837
ENST00000579563 PHF12-017 processed_transcript Homo_sapiens 0 431
ENST00000582436 PHF12-005 retained_intron Homo_sapiens 0 2968
ENST00000582655 PHF12-008 processed_transcript Homo_sapiens 0 2756
ENST00000582853 PHF12-014 protein_coding Homo_sapiens 0 457
ENST00000583524 PHF12-006 nonsense_mediated_decay Homo_sapiens 0 1199
ENST00000583747 PHF12-012 protein_coding Homo_sapiens 0 377
ENST00000584236 PHF12-011 protein_coding Homo_sapiens 0 468
ENST00000584685 PHF12-010 protein_coding Homo_sapiens 0 776
ENST00000584822 PHF12-016 nonsense_mediated_decay Homo_sapiens 0 614
ENST00000589176 PHF12-019 nonsense_mediated_decay Homo_sapiens 0 1216

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