C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PHD finger protein 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000108360 Phf12-002 ENSMUSG00000037791 10090 + 11:77982754-78026214 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderColonKidneyLiverLungMuscleOvaryTestisENSMUST00000108360
Transcript ID Adipose Adrenal Bladder Colon Kidney Liver Lung Muscle Ovary Testis
ENSMUST00000108360 4.941±1.42 11.897±0.00 3.787±0.00 4.470±0.00 3.139±0.48 2.270±0.00 5.965±1.59 1.500±0.09 7.614±1.80 2.326±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006M6 CIL_0006M6_0002 CGP 11:77930800-78030539
CIL_0006M3 CIL_0006M3_0002 CGP 11:77982754-78037866

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISO negative regulation of transcription from RNA polymerase II promoter
GO:0001106 ISO RNA polymerase II transcription corepressor activity
GO:0001222 IPI transcription corepressor binding
GO:0005634 ISS nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0016580 ISO Sin3 complex
GO:0017053 ISS transcriptional repressor complex
GO:0045892 ISS negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000268756 PHF12-002 protein_coding Homo_sapiens 0 3768
ENST00000332830 PHF12-001 protein_coding Homo_sapiens 0 4037
ENST00000378879 PHF12-007 nonsense_mediated_decay Homo_sapiens 0 3550
ENST00000483934 PHF12-003 processed_transcript Homo_sapiens 0 571
ENST00000577226 PHF12-004 protein_coding Homo_sapiens 0 3720
ENST00000578900 PHF12-015 protein_coding Homo_sapiens 0 704
ENST00000579036 PHF12-018 protein_coding Homo_sapiens 0 837
ENST00000579563 PHF12-017 processed_transcript Homo_sapiens 0 431
ENST00000582436 PHF12-005 retained_intron Homo_sapiens 0 2758
ENST00000582655 PHF12-008 processed_transcript Homo_sapiens 0 2756
ENST00000582853 PHF12-014 protein_coding Homo_sapiens 0 457
ENST00000583524 PHF12-006 nonsense_mediated_decay Homo_sapiens 0 1282
ENST00000583747 PHF12-012 protein_coding Homo_sapiens 0 377
ENST00000584236 PHF12-011 protein_coding Homo_sapiens 0 468
ENST00000584685 PHF12-010 protein_coding Homo_sapiens 0 776
ENST00000584822 PHF12-016 nonsense_mediated_decay Homo_sapiens 0 614
ENST00000589176 PHF12-019 nonsense_mediated_decay Homo_sapiens 5e-25 119

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