C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protocadherin 18
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000037892 Pcdh18 10090 - 3:49743296-49757316 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000035931 Pcdh18-201 49743296-49757316 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035931
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035931 4.181±1.57 0.794±0.07 8.723±0.20 5.188±3.21 2.436±0.35 1.521±0.24 1.163±0.21 2.268±0.27 0.473±0.30 8.755±0.66 0.379±0.12 3.023±0.47 1.674±0.63 0.052±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00001R CIL_00001R_0002 CGP 3:49743296-50443613

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 NAS calcium ion binding
GO:0005515 IPI protein binding
GO:0005887 NAS integral component of plasma membrane
GO:0007156 NAS homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007420 IEP brain development
GO:0016339 ISO calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052494 pcdh18b protocadherin 18b protein_coding Danio_rerio
ENSDARG00000089805 pcdh18a protocadherin 18a protein_coding Danio_rerio
ENSG00000189184 PCDH18 protocadherin 18 protein_coding Homo_sapiens

Loading