C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00001R_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000189184-ENSG00000151012 CGP 9606 4:137518918-138242349
GeneTranscriptPositionBiotype
ENSG00000151012 (SLC7A11)
solute carrier family 7 (anionic amino acid transporter light chain, xc- system), member 11 		ENST00000280612 (SLC7A11-001) 138164097-138242349 protein_coding
ENST00000509248 (SLC7A11-002) 138171844-138223244 nonsense_mediated_decay
ENSG00000189184 (PCDH18)
protocadherin 18 		ENST00000344876 (PCDH18-001) 137518918-137532475 protein_coding
ENST00000412923 (PCDH18-002) 137519703-137532459 protein_coding
ENST00000507846 (PCDH18-003) 137519703-137532494 protein_coding
ENST00000510305 (PCDH18-005) 137520838-137532494 protein_coding
ENST00000511115 (PCDH18-006) 137520838-137532476 protein_coding
ENST00000611581 (PCDH18-007) 137521373-137532494 protein_coding
ENST00000617302 (PCDH18-009) 137528567-137529551 retained_intron
ENST00000620262 (PCDH18-008) 137521507-137529576 processed_transcript
ENSG00000250126 (RP13-884E18.2)
 ENST00000505454 (RP13-884E18.2-001) 137645265-137655174 lincRNA
ENSG00000250777 (RP13-884E18.4)
 ENST00000510922 (RP13-884E18.4-001) 137690477-137734977 lincRNA
ENSG00000251632 (RP11-714L20.1)
 ENST00000507365 (RP11-714L20.1-001) 137545731-137603430 lincRNA
ENSG00000280352 (RP13-884E18.3)
 ENST00000624751 (RP13-884E18.3-001) 137601899-137602433 TEC
CIL_00001R_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000037892-ENSMUSG00000027737 CGP 10090 3:49743296-50443613
GeneTranscriptPositionBiotype
ENSMUSG00000027737 (Slc7a11)
solute carrier family 7 (cationic amino acid transporter, y+ system), member 11 		ENSMUST00000029297 (Slc7a11-001) 50364936-50443613 protein_coding
ENSMUST00000142932 (Slc7a11-002) 50415970-50443613 retained_intron
ENSMUSG00000037892 (Pcdh18)
protocadherin 18 		ENSMUST00000035931 (Pcdh18-201) 49743296-49757316 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00001R_0001ENSG00000151012ENST00000280612ENST00000509248ENSG00000189184ENST00000344876ENST00000412923ENST00000507846ENST00000510305ENST00000511115ENST00000611581ENST00000617302ENST00000620262ENSG00000250126ENST00000505454ENSG00000250777ENST00000510922ENSG00000251632ENST00000507365ENSG00000280352ENST00000624751CIL_00001R_0002ENSMUSG00000027737ENSMUST00000029297ENSMUST00000142932ENSMUSG00000037892ENSMUST00000035931
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00001R_0001ENSG00000151012ENST00000280612ENSG00000189184ENST00000344876ENST00000412923ENST00000507846ENST00000510305ENST00000511115ENST00000620262ENSG00000250126ENST00000505454ENSG00000250777ENST00000510922ENSG00000251632ENST00000507365ENSG00000280352ENST00000624751CIL_00001R_0002ENSMUSG00000027737ENSMUST00000029297ENSMUST00000142932ENSMUSG00000037892ENSMUST00000035931
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000151012 ENST00000280612 0.253±0.00 0.165±0.00 0.006±0.00 2.778±0.31 0.060±0.00 N/A 0.036±0.00 0.020±0.00 0.009±0.00 0.501±0.00 0.004±0.00 1.675±1.47 0.128±0.00 0.613±0.06
ENST00000509248 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000189184 ENST00000344876 3.528±0.00 N/A N/A 0.173±0.00 1.448±0.31 1.367±0.00 0.305±0.00 N/A N/A 0.743±0.00 N/A 0.962±0.09 0.940±0.10 N/A
ENST00000412923 10.028±0.00 1.178±0.00 2.043±0.00 0.813±0.19 6.239±0.74 5.969±1.03 1.042±0.26 0.822±0.14 5.757±5.63 2.587±0.30 0.671±0.57 3.145±1.56 6.522±2.04 1.750±1.50
ENST00000507846 3.089±0.00 0.629±0.00 N/A N/A N/A 2.454±0.00 N/A 1.275±0.00 N/A 1.173±0.00 0.703±0.00 0.635±0.00 1.096±0.00 1.335±0.68
ENST00000510305 N/A N/A N/A N/A N/A N/A N/A 0.900±0.00 N/A N/A N/A N/A N/A N/A
ENST00000511115 N/A N/A N/A N/A N/A N/A N/A N/A 0.276±0.00 N/A N/A 1.415±0.00 N/A 0.457±0.00
ENST00000611581 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617302 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000620262 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 26.406±0.00 1.449±0.00
ENSG00000250126 ENST00000505454 0.029±0.00 N/A N/A 0.148±0.00 0.115±0.00 0.892±0.00 0.027±0.00 N/A N/A N/A 0.157±0.00 0.110±0.02 0.303±0.17 0.304±0.10
ENSG00000250777 ENST00000510922 0.046±0.00 N/A N/A N/A 0.091±0.00 N/A 0.021±0.00 0.721±0.00 N/A N/A N/A N/A 0.080±0.00 0.104±0.00
ENSG00000251632 ENST00000507365 0.021±0.00 0.061±0.00 0.021±0.00 0.103±0.01 0.130±0.09 0.011±0.00 0.008±0.00 0.236±0.00 0.013±0.01 0.043±0.03 N/A 0.031±0.02 0.066±0.02 0.033±0.00
ENSG00000280352 ENST00000624751 N/A 0.060±0.00 N/A 0.061±0.00 N/A N/A 0.018±0.00 0.136±0.00 0.223±0.00 N/A N/A N/A 0.224±0.00 0.059±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027737 ENSMUST00000029297 1.470±1.44 0.087±0.05 0.116±0.04 0.660±0.33 0.499±0.21 0.193±0.05 0.009±0.01 0.035±0.01 0.049±0.05 0.341±0.24 0.011±0.01 1.638±0.52 0.181±0.18 0.598±0.32
ENSMUST00000142932 0.023±0.00 N/A N/A N/A N/A 0.069±0.00 0.009±0.00 0.029±0.00 0.037±0.02 N/A 0.007±0.00 N/A N/A N/A
ENSMUSG00000037892 ENSMUST00000035931 4.181±1.57 0.794±0.07 8.723±0.20 5.188±3.21 2.436±0.35 1.521±0.24 1.163±0.21 2.268±0.27 0.473±0.30 8.755±0.66 0.379±0.12 3.023±0.47 1.674±0.63 0.052±0.03

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