C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protocadherin 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000035931 Pcdh18-201 ENSMUSG00000037892 10090 - 3:49743296-49757316 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000035931
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000035931 4.181±1.57 0.794±0.07 8.723±0.20 5.188±3.21 2.436±0.35 1.521±0.24 1.163±0.21 2.268±0.27 0.473±0.30 8.755±0.66 0.379±0.12 3.023±0.47 1.674±0.63 0.052±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00001R CIL_00001R_0002 CGP 3:49743296-50443613

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 NAS calcium ion binding
GO:0005515 IPI protein binding
GO:0005887 NAS integral component of plasma membrane
GO:0007156 NAS homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007420 IEP brain development
GO:0016339 ISO calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000344876 PCDH18-001 protein_coding Homo_sapiens 0 4305
ENST00000412923 PCDH18-002 protein_coding Homo_sapiens 0 4318
ENST00000507846 PCDH18-003 protein_coding Homo_sapiens 0 3827
ENST00000510305 PCDH18-005 protein_coding Homo_sapiens 0 1301
ENST00000511115 PCDH18-006 protein_coding Homo_sapiens 0 1109
ENST00000611581 PCDH18-007 protein_coding Homo_sapiens 0 569
ENST00000617302 PCDH18-009 retained_intron Homo_sapiens 0 224
ENST00000620262 PCDH18-008 processed_transcript Homo_sapiens 0 497

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