C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: protocadherin 18
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000189184 PCDH18 9606 - 4:137518918-137532494 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000344876 PCDH18-001 137518918-137532475 protein_coding
  ENST00000412923 PCDH18-002 137519703-137532459 protein_coding
  ENST00000507846 PCDH18-003 137519703-137532494 protein_coding
  ENST00000510305 PCDH18-005 137520838-137532494 protein_coding
  ENST00000511115 PCDH18-006 137520838-137532476 protein_coding
  ENST00000611581 PCDH18-007 137521373-137532494 protein_coding
  ENST00000617302 PCDH18-009 137528567-137529551 retained_intron
  ENST00000620262 PCDH18-008 137521507-137529576 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000344876ENST00000412923ENST00000507846ENST00000510305ENST00000511115ENST00000620262
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000344876 3.528±0.00 N/A N/A 0.173±0.00 1.448±0.31 1.367±0.00 0.305±0.00 N/A N/A 0.743±0.00 N/A 0.962±0.09 0.940±0.10 N/A
ENST00000412923 10.028±0.00 1.178±0.00 2.043±0.00 0.813±0.19 6.239±0.74 5.969±1.03 1.042±0.26 0.822±0.14 5.757±5.63 2.587±0.30 0.671±0.57 3.145±1.56 6.522±2.04 1.750±1.50
ENST00000507846 3.089±0.00 0.629±0.00 N/A N/A N/A 2.454±0.00 N/A 1.275±0.00 N/A 1.173±0.00 0.703±0.00 0.635±0.00 1.096±0.00 1.335±0.68
ENST00000510305 N/A N/A N/A N/A N/A N/A N/A 0.900±0.00 N/A N/A N/A N/A N/A N/A
ENST00000511115 N/A N/A N/A N/A N/A N/A N/A N/A 0.276±0.00 N/A N/A 1.415±0.00 N/A 0.457±0.00
ENST00000620262 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 26.406±0.00 1.449±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00001R CIL_00001R_0001 CGP 4:137518918-138242349

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007420 ISS brain development
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052494 pcdh18b protocadherin 18b protein_coding Danio_rerio
ENSDARG00000089805 pcdh18a protocadherin 18a protein_coding Danio_rerio
ENSMUSG00000037892 Pcdh18 protocadherin 18 protein_coding Mus_musculus

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