C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: slingshot homolog 2 (Drosophila)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000037926 Ssh2 10090 + 11:77216287-77460220 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000037912 Ssh2-001 77216287-77460220 protein_coding
  ENSMUST00000127890 Ssh2-004 77348280-77413635 processed_transcript
  ENSMUST00000156488 Ssh2-003 77216287-77393153 protein_coding
  ENSMUST00000180394 Ssh2-005 77346743-77350188 retained_intron
  ENSMUST00000180545 Ssh2-006 77391437-77394003 retained_intron
  ENSMUST00000180554 Ssh2-007 77348288-77432157 retained_intron
  ENSMUST00000181283 Ssh2-002 77348282-77455521 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037912ENSMUST00000127890ENSMUST00000180554ENSMUST00000181283
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037912 2.324±0.87 2.078±0.00 5.215±0.23 7.642±3.03 3.249±1.50 2.999±0.84 3.465±0.95 1.270±0.48 1.688±0.64 2.639±0.62 5.710±1.58 2.058±0.93 1.599±0.48 22.236±1.69
ENSMUST00000127890 N/A 3.406±0.82 N/A N/A 16.522±3.52 N/A N/A N/A 1.104±0.00 14.594±1.51 N/A 2.693±0.67 N/A N/A
ENSMUST00000180554 N/A 2.080±0.52 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000181283 2.119±0.88 1.028±0.00 N/A N/A 3.877±0.73 1.592±0.00 3.290±0.35 N/A 0.831±0.00 5.460±0.45 N/A 0.821±0.01 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000873 CIL_000873_0002 VISTA 11:77122469-77724441
CIL_0009BZ CIL_0009BZ_0002 VISTA 11:77122483-77724456

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003779 IBA actin binding
GO:0004725 IEA protein tyrosine phosphatase activity
GO:0005737 IBA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0006470 IBA protein dephosphorylation
GO:0008064 IBA regulation of actin polymerization or depolymerization
GO:0008138 IBA protein tyrosine/serine/threonine phosphatase activity
GO:0010591 IBA regulation of lamellipodium assembly
GO:0030054 IEA cell junction
GO:0035335 IEA peptidyl-tyrosine dephosphorylation
GO:0050770 IBA regulation of axonogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000077623 ssh2b slingshot homolog 2b (Drosophila) protein_coding Danio_rerio
ENSDARG00000088440 ssh2a slingshot homolog 2a (Drosophila) protein_coding Danio_rerio
ENSG00000141298 SSH2 slingshot protein phosphatase 2 protein_coding Homo_sapiens

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