C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: slingshot homolog 2 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000127890 Ssh2-004 ENSMUSG00000037926 10090 + 11:77348280-77413635 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastLiverLungOvaryENSMUST00000127890
Transcript ID Adrenal Breast Liver Lung Ovary
ENSMUST00000127890 3.406±0.82 16.522±3.52 1.104±0.00 14.594±1.51 2.693±0.67

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000873 CIL_000873_0002 VISTA 11:77122469-77724441
CIL_0009BZ CIL_0009BZ_0002 VISTA 11:77122483-77724456

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000269033 SSH2-001 protein_coding Homo_sapiens 0 433
ENST00000324677 SSH2-005 processed_transcript Homo_sapiens 0 606
ENST00000394848 SSH2-002 retained_intron Homo_sapiens 0 433
ENST00000540801 SSH2-003 protein_coding Homo_sapiens 0 433
ENST00000577483 SSH2-006 retained_intron Homo_sapiens 0 433
ENST00000579040 SSH2-004 nonsense_mediated_decay Homo_sapiens 0 433
ENST00000592397 SSH2-012 protein_coding Homo_sapiens 0 433

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