C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: slingshot homolog 2 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000181283 Ssh2-002 ENSMUSG00000037926 10090 + 11:77348282-77455521 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartLiverLungOvaryENSMUST00000181283
Transcript ID Adipose Adrenal Breast Colon Heart Liver Lung Ovary
ENSMUST00000181283 2.119±0.88 1.028±0.00 3.877±0.73 1.592±0.00 3.290±0.35 0.831±0.00 5.460±0.45 0.821±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000873 CIL_000873_0002 VISTA 11:77122469-77724441
CIL_0009BZ CIL_0009BZ_0002 VISTA 11:77122483-77724456

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003779 IBA actin binding
GO:0004725 IEA protein tyrosine phosphatase activity
GO:0005737 IBA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0006470 IBA protein dephosphorylation
GO:0008064 IBA regulation of actin polymerization or depolymerization
GO:0008138 IBA protein tyrosine/serine/threonine phosphatase activity
GO:0010591 IBA regulation of lamellipodium assembly
GO:0030054 IEA cell junction
GO:0035335 IEA peptidyl-tyrosine dephosphorylation
GO:0050770 IBA regulation of axonogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000269033 SSH2-001 protein_coding Homo_sapiens 0 4440
ENST00000324677 SSH2-005 processed_transcript Homo_sapiens 0 793
ENST00000394848 SSH2-002 retained_intron Homo_sapiens 0 1770
ENST00000540801 SSH2-003 protein_coding Homo_sapiens 0 4440
ENST00000577483 SSH2-006 retained_intron Homo_sapiens 0 621
ENST00000579040 SSH2-004 nonsense_mediated_decay Homo_sapiens 0 619
ENST00000592397 SSH2-012 protein_coding Homo_sapiens 0 451

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