C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GRIP and coiled-coil domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000057659 Gcc2-001 ENSMUSG00000038039 10090 + 10:58255497-58305599 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000057659
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000057659 0.496±0.04 0.518±0.00 3.097±0.50 4.790±3.01 0.625±0.21 3.268±1.47 0.481±0.25 1.158±0.51 1.204±0.58 1.956±0.06 1.146±0.27 2.371±1.77 2.726±0.70 1.570±0.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RA CIL_0007RA_0002 VISTA 10:58082278-58683620
CIL_00010T CIL_00010T_0002 CGP 10:58255497-58424691

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000042 IEA protein targeting to Golgi
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0005802 IEA trans-Golgi network
GO:0006622 IEA protein targeting to lysosome
GO:0016020 IEA membrane
GO:0031023 IEA microtubule organizing center organization
GO:0034067 IEA protein localization to Golgi apparatus
GO:0034453 IEA microtubule anchoring
GO:0034499 IEA late endosome to Golgi transport
GO:0042147 IEA retrograde transport, endosome to Golgi
GO:0042802 IEA identical protein binding
GO:0070861 IEA regulation of protein exit from endoplasmic reticulum
GO:0071955 IEA recycling endosome to Golgi transport
GO:0090161 IEA Golgi ribbon formation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000016946 RGPD5-001 protein_coding Homo_sapiens 0 472
ENST00000302558 RGPD8-006 protein_coding Homo_sapiens 0 466
ENST00000304514 RGPD3-201 protein_coding Homo_sapiens 0 366
ENST00000309863 GCC2-014 protein_coding Homo_sapiens 0 4529
ENST00000329516 RGPD6-001 protein_coding Homo_sapiens 0 472
ENST00000393321 GCC2-004 nonsense_mediated_decay Homo_sapiens 0 889
ENST00000398146 RGPD2-001 protein_coding Homo_sapiens 0 355
ENST00000398193 RGPD1-201 protein_coding Homo_sapiens 0 355
ENST00000408999 RGPD4-001 protein_coding Homo_sapiens 0 455
ENST00000409750 RGPD8-001 protein_coding Homo_sapiens 0 466
ENST00000409776 RGPD1-202 protein_coding Homo_sapiens 0 355
ENST00000409821 GCC2-006 protein_coding Homo_sapiens 0 544
ENST00000409886 RGPD3-002 protein_coding Homo_sapiens 0 440
ENST00000409896 GCC2-003 protein_coding Homo_sapiens 0 2189
ENST00000428128 RGPD1-003 nonsense_mediated_decay Homo_sapiens 0 355
ENST00000463822 RGPD6-006 retained_intron Homo_sapiens 0 483
ENST00000477523 RGPD5-007 retained_intron Homo_sapiens 0 483
ENST00000478207 GCC2-007 processed_transcript Homo_sapiens 2e-32 143
ENST00000480863 GCC2-010 retained_intron Homo_sapiens 0 503
ENST00000481729 GCC2-012 retained_intron Homo_sapiens 0 313
ENST00000482325 GCC2-001 nonsense_mediated_decay Homo_sapiens 0 4414
ENST00000559485 RGPD1-001 protein_coding Homo_sapiens 0 355
ENST00000614209 GCC2-201 protein_coding Homo_sapiens 0 1738

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