C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GRIP and coiled-coil domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000162965 Gcc2-003 ENSMUSG00000038039 10090 + 10:58298410-58305589 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000162965
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000162965 2.293±0.84 1.959±0.74 7.832±0.98 8.683±1.55 2.635±1.30 4.915±1.12 1.729±0.68 3.111±1.22 2.836±1.74 6.424±2.74 3.756±0.65 2.542±0.58 4.486±1.69 4.235±1.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RA CIL_0007RA_0002 VISTA 10:58082278-58683620
CIL_00010T CIL_00010T_0002 CGP 10:58255497-58424691

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000016946 RGPD5-001 protein_coding Homo_sapiens 2e-37 163
ENST00000309863 GCC2-014 protein_coding Homo_sapiens 0 193
ENST00000329516 RGPD6-001 protein_coding Homo_sapiens 2e-37 163
ENST00000463822 RGPD6-006 retained_intron Homo_sapiens 2e-37 163
ENST00000477523 RGPD5-007 retained_intron Homo_sapiens 2e-37 163
ENST00000480863 GCC2-010 retained_intron Homo_sapiens 0 193
ENST00000482325 GCC2-001 nonsense_mediated_decay Homo_sapiens 0 193

Loading