C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sno, strawberry notch homolog 1 (Drosophila)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038095 Sbno1 10090 - 5:124368702-124425914 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000065263 Sbno1-201 124368702-124425914 protein_coding
  ENSMUST00000168651 Sbno1-202 124374013-124425572 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000065263ENSMUST00000168651
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000065263 0.605±0.00 2.569±0.00 3.204±1.40 9.534±4.07 1.925±0.72 3.069±0.00 0.700±0.16 1.969±0.82 2.215±2.26 N/A 1.115±0.56 2.908±1.66 2.242±0.86 7.444±3.72
ENSMUST00000168651 4.845±0.00 N/A 3.585±0.00 6.203±4.01 N/A N/A 2.643±0.00 N/A 2.507±0.02 3.198±0.00 2.068±0.58 5.751±4.73 11.676±6.07 16.851±16.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084E CIL_00084E_0002 VISTA 5:123871507-124476501
CIL_0003J6 CIL_0003J6_0002 CGP 5:124345417-124425914
CIL_000665 CIL_000665_0002 CGP 5:124368702-124462308

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000087600 strawberry notch homolog 1 (Drosophila) protein_coding Danio_rerio
ENSG00000139697 SBNO1 strawberry notch homolog 1 (Drosophila) protein_coding Homo_sapiens

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