C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sno, strawberry notch homolog 1 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000168651 Sbno1-202 ENSMUSG00000038095 10090 - 5:124374013-124425572 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000168651
Transcript ID Adipose Bladder Brain Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000168651 4.845±0.00 3.585±0.00 6.203±4.01 2.643±0.00 2.507±0.02 3.198±0.00 2.068±0.58 5.751±4.73 11.676±6.07 16.851±16.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084E CIL_00084E_0002 VISTA 5:123871507-124476501
CIL_0003J6 CIL_0003J6_0002 CGP 5:124345417-124425914
CIL_000665 CIL_000665_0002 CGP 5:124368702-124462308

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000267176 SBNO1-001 protein_coding Homo_sapiens 0 5681
ENST00000420886 SBNO1-201 protein_coding Homo_sapiens 0 5618
ENST00000602398 SBNO1-002 protein_coding Homo_sapiens 0 5424

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