C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PHD finger protein 20
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038116 Phf20 10090 + 2:156196466-156309952 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000037401 Phf20-001 156196642-156309952 protein_coding
  ENSMUST00000122814 Phf20-009 156296405-156304692 processed_transcript
  ENSMUST00000131479 Phf20-006 156263185-156272624 processed_transcript
  ENSMUST00000132129 Phf20-002 156196756-156254514 retained_intron
  ENSMUST00000132352 Phf20-007 156293745-156298599 retained_intron
  ENSMUST00000135796 Phf20-003 156196754-156223992 retained_intron
  ENSMUST00000145731 Phf20-010 156196466-156254310 protein_coding
  ENSMUST00000147234 Phf20-011 156282631-156292528 processed_transcript
  ENSMUST00000147242 Phf20-008 156296029-156298691 processed_transcript
  ENSMUST00000152617 Phf20-004 156196734-156309949 processed_transcript
  ENSMUST00000153822 Phf20-005 156222880-156251810 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037401ENSMUST00000122814ENSMUST00000147234ENSMUST00000152617
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037401 1.728±0.27 1.238±0.48 4.691±0.79 9.441±1.54 1.397±0.23 1.054±0.49 1.045±0.26 1.556±0.33 1.171±0.82 1.751±0.44 3.341±0.66 2.104±0.93 6.056±2.57 2.525±0.57
ENSMUST00000122814 3.311±0.50 3.147±0.39 N/A N/A 3.471±0.53 2.899±1.54 1.268±0.00 2.603±0.10 N/A 4.248±0.78 N/A 6.088±0.81 N/A 2.730±0.00
ENSMUST00000147234 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 35.769±0.00
ENSMUST00000152617 N/A 3.361±0.65 N/A 5.456±0.00 2.107±0.86 1.464±0.16 N/A N/A 0.320±0.00 1.244±0.48 N/A 4.540±1.58 2.222±0.82 1.434±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000X2 CIL_0000X2_0002 CGP 2:156147239-156309952
CIL_00056T CIL_00056T_0002 CGP 2:156196466-156312704

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000123 ISS histone acetyltransferase complex
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0031965 IEA nuclear membrane
GO:0043981 ISS histone H4-K5 acetylation
GO:0043982 ISS histone H4-K8 acetylation
GO:0043984 ISS histone H4-K16 acetylation
GO:0043995 ISS histone acetyltransferase activity (H4-K5 specific)
GO:0043996 ISS histone acetyltransferase activity (H4-K8 specific)
GO:0046972 ISS histone acetyltransferase activity (H4-K16 specific)
GO:0071339 ISS MLL1 complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002750 phf20a PHD finger protein 20, a protein_coding Danio_rerio
ENSDARG00000038737 phf20b PHD finger protein 20, b protein_coding Danio_rerio
ENSG00000025293 PHF20 PHD finger protein 20 protein_coding Homo_sapiens

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