C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PHD finger protein 20
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000025293 PHF20 9606 + 20:35771974-35950381 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000339089 PHF20-001 35772026-35913316 protein_coding
  ENST00000374000 PHF20-004 35772026-35913335 protein_coding
  ENST00000374012 PHF20-003 35771983-35950381 protein_coding
  ENST00000420233 PHF20-015 35917180-35917659 protein_coding
  ENST00000439301 PHF20-201 35801490-35917659 protein_coding
  ENST00000449988 PHF20-012 35849389-35863376 protein_coding
  ENST00000452270 PHF20-011 35772022-35847430 nonsense_mediated_decay
  ENST00000461122 PHF20-005 35771974-35863400 processed_transcript
  ENST00000461405 PHF20-010 35772012-35801972 retained_intron
  ENST00000473943 PHF20-016 35938632-35940929 retained_intron
  ENST00000480940 PHF20-009 35856356-35863400 processed_transcript
  ENST00000481202 PHF20-006 35772026-35913316 processed_transcript
  ENST00000485604 PHF20-014 35869530-35871893 retained_intron
  ENST00000486408 PHF20-008 35855231-35871120 processed_transcript
  ENST00000495338 PHF20-013 35855254-35899525 processed_transcript
  ENST00000496305 PHF20-007 35855301-35863248 processed_transcript
  ENST00000617560 PHF20-017 35772033-35775058 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000374012ENST00000439301ENST00000461122ENST00000481202ENST00000486408ENST00000617560
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000374012 6.259±0.00 2.208±0.00 0.640±0.00 5.242±1.25 2.438±1.46 2.086±0.43 2.555±1.53 2.051±0.75 3.555±0.00 3.491±1.75 N/A 3.536±1.96 3.545±0.51 4.757±2.16
ENST00000439301 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.728±0.00
ENST00000461122 N/A N/A N/A N/A 4.589±0.00 N/A N/A 1.765±0.00 N/A N/A N/A N/A N/A N/A
ENST00000481202 N/A N/A 0.895±0.00 N/A 3.206±0.00 N/A 0.809±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000486408 N/A N/A 1.053±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000617560 N/A 7.649±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 7.784±0.00 6.181±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000X2 CIL_0000X2_0001 CGP 20:35703609-35950381
CIL_00056T CIL_00056T_0001 CGP 20:35771974-35959472

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000123 IDA histone acetyltransferase complex
GO:0003677 IEA DNA binding
GO:0005515 IPI:IEA protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0006325 TAS chromatin organization
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0031965 IDA nuclear membrane
GO:0043981 IDA histone H4-K5 acetylation
GO:0043982 IDA histone H4-K8 acetylation
GO:0043984 IDA histone H4-K16 acetylation
GO:0043995 IDA histone acetyltransferase activity (H4-K5 specific)
GO:0043996 IDA histone acetyltransferase activity (H4-K8 specific)
GO:0046872 IEA metal ion binding
GO:0046972 IDA histone acetyltransferase activity (H4-K16 specific)
GO:0071339 IDA MLL1 complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002750 phf20a PHD finger protein 20, a protein_coding Danio_rerio
ENSDARG00000038737 phf20b PHD finger protein 20, b protein_coding Danio_rerio
ENSMUSG00000038116 Phf20 PHD finger protein 20 protein_coding Mus_musculus

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