C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PHD finger protein 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000152617 Phf20-004 ENSMUSG00000038116 10090 + 2:156196734-156309949 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonLiverLungOvaryPlacentaTestisENSMUST00000152617
Transcript ID Adrenal Brain Breast Colon Liver Lung Ovary Placenta Testis
ENSMUST00000152617 3.361±0.65 5.456±0.00 2.107±0.86 1.464±0.16 0.320±0.00 1.244±0.48 4.540±1.58 2.222±0.82 1.434±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000X2 CIL_0000X2_0002 CGP 2:156147239-156309952
CIL_00056T CIL_00056T_0002 CGP 2:156196466-156312704

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000339089 PHF20-001 protein_coding Homo_sapiens 0 1679
ENST00000374000 PHF20-004 protein_coding Homo_sapiens 0 1714
ENST00000374012 PHF20-003 protein_coding Homo_sapiens 0 3777
ENST00000420233 PHF20-015 protein_coding Homo_sapiens 0 250
ENST00000439301 PHF20-201 protein_coding Homo_sapiens 0 2159
ENST00000449988 PHF20-012 protein_coding Homo_sapiens 0 560
ENST00000452270 PHF20-011 nonsense_mediated_decay Homo_sapiens 0 231
ENST00000461122 PHF20-005 processed_transcript Homo_sapiens 0 924
ENST00000480940 PHF20-009 processed_transcript Homo_sapiens 0 592
ENST00000481202 PHF20-006 processed_transcript Homo_sapiens 0 1206
ENST00000485604 PHF20-014 retained_intron Homo_sapiens 0 311
ENST00000486408 PHF20-008 processed_transcript Homo_sapiens 0 887
ENST00000495338 PHF20-013 processed_transcript Homo_sapiens 0 294
ENST00000496305 PHF20-007 processed_transcript Homo_sapiens 0 448

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