C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00056T_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000025293-ENSG00000171222 CGP 9606 20:35771974-35959472
GeneTranscriptPositionBiotype
ENSG00000149646 (CNBD2)
cyclic nucleotide binding domain containing 2 		ENST00000349339 (CNBD2-003) 35968607-36030700 protein_coding
ENST00000373973 (CNBD2-001) 35968590-36030700 protein_coding
ENST00000463258 (CNBD2-006) 35968623-36030669 nonsense_mediated_decay
ENST00000489667 (CNBD2-002) 35968611-35974956 protein_coding
ENST00000538900 (CNBD2-005) 35968623-36030669 protein_coding
ENST00000614708 (CNBD2-008) 35954707-35955368 protein_coding
ENST00000622112 (CNBD2-007) 35954564-35980581 protein_coding
ENSG00000171222 (SCAND1)
SCAN domain containing 1 		ENST00000305978 (SCAND1-002) 35953617-35954626 protein_coding
ENST00000373991 (SCAND1-001) 35953629-35959472 protein_coding
ENST00000615116 (SCAND1-201) 35953617-35955359 protein_coding
ENSG00000199676 (Y_RNA)
Y RNA 		ENST00000362806 (Y_RNA.1-257) 35853252-35853364 misc_RNA
ENSG00000201221 (RNU4-40P)
RNA, U4 small nuclear 40, pseudogene 		ENST00000364351 (RNU4-40P-201) 35887659-35887801 snRNA
ENSG00000219608 (HIGD1AP16)
HIG1 hypoxia inducible domain family, member 1A pseudogene 16 		ENST00000450986 (HIGD1AP16-001) 35878476-35878733 processed_pseudogene
ENSG00000234274 (COX7BP2)
cytochrome c oxidase subunit VIIb pseudogene 2 		ENST00000437976 (COX7BP2-001) 35850674-35850915 processed_pseudogene
CIL_00056T_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000038116-ENSMUSG00000046229 CGP 10090 2:156196466-156312704
GeneTranscriptPositionBiotype
ENSMUSG00000038085 (Cnbd2)
cyclic nucleotide binding domain containing 2 		ENSMUST00000037096 (Cnbd2-001) 156312299-156375635 protein_coding
ENSMUST00000073942 (Cnbd2-003) 156312592-156357102 protein_coding
ENSMUST00000109580 (Cnbd2-002) 156312633-156375638 protein_coding
ENSMUST00000125395 (Cnbd2-005) 156312578-156338665 processed_transcript
ENSMUST00000133056 (Cnbd2-004) 156312617-156320929 retained_intron
ENSMUST00000154227 (Cnbd2-006) 156333861-156339266 processed_transcript
ENSMUSG00000038116 (Phf20)
PHD finger protein 20 		ENSMUST00000037401 (Phf20-001) 156196642-156309952 protein_coding
ENSMUST00000122814 (Phf20-009) 156296405-156304692 processed_transcript
ENSMUST00000131479 (Phf20-006) 156263185-156272624 processed_transcript
ENSMUST00000132129 (Phf20-002) 156196756-156254514 retained_intron
ENSMUST00000132352 (Phf20-007) 156293745-156298599 retained_intron
ENSMUST00000135796 (Phf20-003) 156196754-156223992 retained_intron
ENSMUST00000145731 (Phf20-010) 156196466-156254310 protein_coding
ENSMUST00000147234 (Phf20-011) 156282631-156292528 processed_transcript
ENSMUST00000147242 (Phf20-008) 156296029-156298691 processed_transcript
ENSMUST00000152617 (Phf20-004) 156196734-156309949 processed_transcript
ENSMUST00000153822 (Phf20-005) 156222880-156251810 processed_transcript
ENSMUSG00000046229 (Scand1)
SCAN domain-containing 1 		ENSMUST00000079125 (Scand1-201) 156311847-156312704 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00056T_0001ENSG00000149646ENST00000349339ENST00000373973ENST00000463258ENST00000489667ENST00000538900ENST00000614708ENST00000622112ENSG00000171222ENST00000305978ENST00000373991ENST00000615116ENSG00000199676ENST00000362806ENSG00000201221ENST00000364351ENSG00000219608ENST00000450986ENSG00000234274ENST00000437976CIL_00056T_0002ENSMUSG00000038085ENSMUST00000037096ENSMUST00000073942ENSMUST00000109580ENSMUST00000125395ENSMUST00000133056ENSMUST00000154227ENSMUSG00000038116ENSMUST00000037401ENSMUST00000122814ENSMUST00000131479ENSMUST00000132129ENSMUST00000132352ENSMUST00000135796ENSMUST00000145731ENSMUST00000147234ENSMUST00000147242ENSMUST00000152617ENSMUST00000153822ENSMUSG00000046229ENSMUST00000079125
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00056T_0001ENSG00000149646ENST00000349339ENST00000373973ENST00000463258ENST00000489667ENST00000614708ENSG00000171222ENST00000305978ENST00000373991ENSG00000199676ENST00000362806ENSG00000201221ENST00000364351ENSG00000219608ENST00000450986ENSG00000234274ENST00000437976CIL_00056T_0002ENSMUSG00000038085ENSMUST00000037096ENSMUST00000073942ENSMUST00000109580ENSMUSG00000038116ENSMUST00000037401ENSMUST00000122814ENSMUST00000147234ENSMUST00000152617ENSMUSG00000046229ENSMUST00000079125
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000149646 ENST00000349339 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.212±0.00
ENST00000373973 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.258±0.00
ENST00000463258 N/A N/A 0.165±0.00 N/A N/A N/A 0.140±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000489667 N/A N/A 0.121±0.00 N/A N/A N/A 0.047±0.00 N/A N/A N/A N/A 0.104±0.00 N/A N/A
ENST00000538900 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614708 N/A N/A N/A 2.090±0.00 0.707±0.00 1.549±0.00 0.954±0.67 N/A N/A N/A N/A 2.160±0.92 N/A N/A
ENST00000622112 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000171222 ENST00000305978 38.621±0.00 69.184±0.00 1.102±0.00 16.863±11.39 26.196±21.61 14.541±10.47 12.822±11.55 40.014±32.85 31.709±30.14 27.244±25.21 22.205±8.22 23.693±19.65 37.087±21.97 35.294±0.00
ENST00000373991 N/A 4.791±0.00 N/A N/A 3.576±0.00 N/A N/A N/A 0.248±0.00 N/A N/A 0.866±0.00 2.936±0.79 N/A
ENST00000615116 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000199676 ENST00000362806 N/A N/A N/A 0.141±0.00 N/A 0.131±0.00 0.257±0.00 N/A N/A 1.002±0.00 N/A N/A N/A 0.131±0.00
ENSG00000201221 ENST00000364351 N/A N/A N/A 0.186±0.00 21.038±0.00 21.202±0.00 N/A 17.018±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000219608 ENST00000450986 0.099±0.00 0.050±0.00 N/A 0.249±0.00 0.047±0.00 N/A N/A N/A N/A N/A 0.574±0.00 0.832±0.00 0.500±0.00 0.271±0.09
ENSG00000234274 ENST00000437976 N/A N/A 7.497±0.00 0.050±0.00 N/A N/A 0.046±0.00 N/A 7.027±0.00 N/A N/A 1.424±1.24 N/A 0.045±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000038085 ENSMUST00000037096 N/A N/A N/A N/A N/A 17.274±0.00 1.371±0.00 N/A N/A N/A 0.622±0.21 6.700±6.16 1.185±0.53 42.558±2.58
ENSMUST00000073942 N/A N/A 4.603±0.95 N/A 0.898±0.00 N/A N/A 18.837±0.00 4.010±0.00 N/A 0.382±0.00 0.778±0.09 N/A N/A
ENSMUST00000109580 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.489±0.23 N/A 19.709±0.00
ENSMUST00000125395 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133056 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154227 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000038116 ENSMUST00000037401 1.728±0.27 1.238±0.48 4.691±0.79 9.441±1.54 1.397±0.23 1.054±0.49 1.045±0.26 1.556±0.33 1.171±0.82 1.751±0.44 3.341±0.66 2.104±0.93 6.056±2.57 2.525±0.57
ENSMUST00000122814 3.311±0.50 3.147±0.39 N/A N/A 3.471±0.53 2.899±1.54 1.268±0.00 2.603±0.10 N/A 4.248±0.78 N/A 6.088±0.81 N/A 2.730±0.00
ENSMUST00000131479 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132129 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132352 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135796 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145731 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147234 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 35.769±0.00
ENSMUST00000147242 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152617 N/A 3.361±0.65 N/A 5.456±0.00 2.107±0.86 1.464±0.16 N/A N/A 0.320±0.00 1.244±0.48 N/A 4.540±1.58 2.222±0.82 1.434±0.00
ENSMUST00000153822 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000046229 ENSMUST00000079125 54.818±14.91 164.858±25.10 48.827±4.25 54.780±20.68 106.251±40.10 100.665±19.32 17.840±5.86 82.970±9.28 35.197±14.55 82.540±15.72 10.018±3.13 87.266±15.44 30.234±10.10 142.586±22.23

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