C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PHD finger protein 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000037401 Phf20-001 ENSMUSG00000038116 10090 + 2:156196642-156309952 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037401
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037401 1.728±0.27 1.238±0.48 4.691±0.79 9.441±1.54 1.397±0.23 1.054±0.49 1.045±0.26 1.556±0.33 1.171±0.82 1.751±0.44 3.341±0.66 2.104±0.93 6.056±2.57 2.525±0.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000X2 CIL_0000X2_0002 CGP 2:156147239-156309952
CIL_00056T CIL_00056T_0002 CGP 2:156196466-156312704

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000123 ISS histone acetyltransferase complex
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0031965 IEA nuclear membrane
GO:0043981 ISS histone H4-K5 acetylation
GO:0043982 ISS histone H4-K8 acetylation
GO:0043984 ISS histone H4-K16 acetylation
GO:0043995 ISS histone acetyltransferase activity (H4-K5 specific)
GO:0043996 ISS histone acetyltransferase activity (H4-K8 specific)
GO:0046972 ISS histone acetyltransferase activity (H4-K16 specific)
GO:0071339 ISS MLL1 complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000339089 PHF20-001 protein_coding Homo_sapiens 0 1858
ENST00000374000 PHF20-004 protein_coding Homo_sapiens 0 1892
ENST00000374012 PHF20-003 protein_coding Homo_sapiens 0 4113
ENST00000420233 PHF20-015 protein_coding Homo_sapiens 0 250
ENST00000439301 PHF20-201 protein_coding Homo_sapiens 0 2338
ENST00000449988 PHF20-012 protein_coding Homo_sapiens 0 560
ENST00000452270 PHF20-011 nonsense_mediated_decay Homo_sapiens 0 411
ENST00000461122 PHF20-005 processed_transcript Homo_sapiens 0 929
ENST00000461405 PHF20-010 retained_intron Homo_sapiens 0 270
ENST00000480940 PHF20-009 processed_transcript Homo_sapiens 0 592
ENST00000481202 PHF20-006 processed_transcript Homo_sapiens 0 1206
ENST00000485604 PHF20-014 retained_intron Homo_sapiens 0 311
ENST00000486408 PHF20-008 processed_transcript Homo_sapiens 0 887
ENST00000495338 PHF20-013 processed_transcript Homo_sapiens 0 294
ENST00000496305 PHF20-007 processed_transcript Homo_sapiens 0 448

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