C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SNF related kinase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038145 Snrk 10090 + 9:122117283-122169702 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000118886 Snrk-003 122117375-122168067 protein_coding
  ENSMUST00000119215 Snrk-004 122117359-122137131 protein_coding
  ENSMUST00000120173 Snrk-001 122117339-122169702 protein_coding
  ENSMUST00000131169 Snrk-006 122160072-122166391 retained_intron
  ENSMUST00000134949 Snrk-002 122117347-122166389 protein_coding
  ENSMUST00000139181 Snrk-009 122117310-122137284 protein_coding
  ENSMUST00000142784 Snrk-010 122117752-122136976 processed_transcript
  ENSMUST00000145384 Snrk-008 122166744-122167475 processed_transcript
  ENSMUST00000146832 Snrk-005 122117283-122137176 protein_coding
  ENSMUST00000151872 Snrk-007 122163869-122166490 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000118886ENSMUST00000120173ENSMUST00000134949
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000118886 N/A N/A N/A N/A 7.881±1.12 N/A N/A N/A N/A N/A N/A N/A 1.142±0.00 3.237±0.97
ENSMUST00000120173 55.428±26.31 39.929±6.90 20.468±0.84 13.395±7.51 23.901±10.50 21.372±3.31 25.524±1.81 19.944±1.81 12.452±3.79 56.844±8.71 4.758±1.31 20.441±8.08 5.805±3.25 4.630±0.13
ENSMUST00000134949 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.349±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003F0 CIL_0003F0_0002 CGP 9:121981606-122169702
CIL_0003F1 CIL_0003F1_0002 CGP 9:122117283-122294374

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000287 ISS magnesium ion binding
GO:0004674 ISS protein serine/threonine kinase activity
GO:0005524 ISS ATP binding
GO:0005634 ISS nucleus
GO:0006468 ISS protein phosphorylation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070832 snrka SNF related kinase a protein_coding Danio_rerio
ENSG00000163788 SNRK SNF related kinase protein_coding Homo_sapiens

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