C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SNF related kinase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120173 Snrk-001 ENSMUSG00000038145 10090 + 9:122117339-122169702 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000120173
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000120173 55.428±26.31 39.929±6.90 20.468±0.84 13.395±7.51 23.901±10.50 21.372±3.31 25.524±1.81 19.944±1.81 12.452±3.79 56.844±8.71 4.758±1.31 20.441±8.08 5.805±3.25 4.630±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003F0 CIL_0003F0_0002 CGP 9:121981606-122169702
CIL_0003F1 CIL_0003F1_0002 CGP 9:122117283-122294374

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000287 ISS magnesium ion binding
GO:0004674 ISS protein serine/threonine kinase activity
GO:0005524 ISS ATP binding
GO:0005634 ISS nucleus
GO:0006468 ISS protein phosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296088 SNRK-004 protein_coding Homo_sapiens 0 2119
ENST00000429705 SNRK-002 protein_coding Homo_sapiens 0 2220
ENST00000437827 SNRK-003 protein_coding Homo_sapiens 0 1282
ENST00000454177 SNRK-001 protein_coding Homo_sapiens 0 2119
ENST00000462810 SNRK-005 processed_transcript Homo_sapiens 0 970
ENST00000468628 SNRK-008 processed_transcript Homo_sapiens 4e-39 165
ENST00000481892 SNRK-007 retained_intron Homo_sapiens 0 494
ENST00000520549 IRGM-002 nonsense_mediated_decay Homo_sapiens 1e-23 113

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