C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: leprecan-like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038168 Leprel1 10090 - 16:25959288-26105784 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000039990 Leprel1-001 25959288-26105784 protein_coding
  ENSMUST00000159161 Leprel1-002 25997161-26014593 processed_transcript
  ENSMUST00000160067 Leprel1-004 25972282-25985174 retained_intron
  ENSMUST00000161878 Leprel1-003 25985504-25992791 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000039990ENSMUST00000159161ENSMUST00000160067ENSMUST00000161878
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000039990 2.211±1.54 2.976±0.29 3.156±1.12 0.394±0.05 1.405±0.65 4.060±0.70 0.550±0.04 27.687±5.76 0.522±0.37 3.857±0.20 0.845±0.40 7.113±2.48 7.849±3.80 0.222±0.10
ENSMUST00000159161 N/A N/A N/A 4.728±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.989±0.00
ENSMUST00000160067 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.903±0.00 N/A 0.394±0.13
ENSMUST00000161878 N/A N/A N/A N/A N/A N/A N/A N/A 0.645±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000DP CIL_0000DP_0002 CGP 16:25683763-26105784
CIL_0000DQ CIL_0000DQ_0002 CGP 16:25959288-26371841

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005506 IEA iron ion binding
GO:0005604 IDA basement membrane
GO:0005783 ISS endoplasmic reticulum
GO:0005794 ISS Golgi apparatus
GO:0008285 ISS negative regulation of cell proliferation
GO:0019511 ISS peptidyl-proline hydroxylation
GO:0019797 ISS procollagen-proline 3-dioxygenase activity
GO:0031418 IEA L-ascorbic acid binding
GO:0032963 ISS collagen metabolic process
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000071448 leprel1 leprecan-like 1 protein_coding Danio_rerio
ENSG00000090530 LEPREL1 leprecan-like 1 protein_coding Homo_sapiens

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