C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: leprecan-like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000090530 LEPREL1 9606 - 3:189956728-190122437 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000319332 LEPREL1-001 189956728-190120929 protein_coding
  ENST00000426003 LEPREL1-003 189988915-190121678 protein_coding
  ENST00000427335 LEPREL1-002 189956831-190122437 protein_coding
  ENST00000444866 LEPREL1-004 189988907-190116648 protein_coding
  ENST00000463171 LEPREL1-010 189963459-189971927 retained_intron
  ENST00000467131 LEPREL1-008 189964050-189973184 retained_intron
  ENST00000470925 LEPREL1-005 189974568-189987765 retained_intron
  ENST00000475095 LEPREL1-006 189974573-189983484 retained_intron
  ENST00000482780 LEPREL1-007 189971548-189974190 retained_intron
  ENST00000490940 LEPREL1-009 189957697-189964121 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000319332ENST00000427335ENST00000444866ENST00000467131ENST00000470925ENST00000490940
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000319332 1.355±0.00 1.794±0.00 4.307±0.00 0.571±0.00 2.531±0.00 1.634±1.17 0.572±0.00 19.800±18.91 0.352±0.15 5.791±1.56 0.151±0.00 7.238±4.43 5.166±1.09 2.498±1.10
ENST00000427335 N/A N/A N/A N/A N/A N/A 0.052±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000444866 N/A N/A N/A 0.644±0.00 N/A N/A N/A N/A N/A N/A 0.150±0.00 N/A N/A N/A
ENST00000467131 N/A N/A N/A N/A N/A N/A N/A N/A 2.305±0.00 N/A N/A N/A N/A N/A
ENST00000470925 N/A N/A N/A N/A N/A 1.426±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490940 N/A N/A N/A N/A N/A N/A N/A N/A 1.022±0.00 N/A 0.124±0.00 N/A N/A 4.853±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000DP CIL_0000DP_0001 CGP 3:189631416-190122437
CIL_0000DQ CIL_0000DQ_0001 CGP 3:189956728-190322475

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005506 IEA iron ion binding
GO:0005604 ISS basement membrane
GO:0005783 IDA endoplasmic reticulum
GO:0005788 TAS endoplasmic reticulum lumen
GO:0005794 IDA Golgi apparatus
GO:0008285 IDA negative regulation of cell proliferation
GO:0016491 IEA oxidoreductase activity
GO:0016705 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0016706 IEA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0019511 IDA peptidyl-proline hydroxylation
GO:0019797 IDA procollagen-proline 3-dioxygenase activity
GO:0030198 TAS extracellular matrix organization
GO:0031418 IEA L-ascorbic acid binding
GO:0032963 IDA collagen metabolic process
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000071448 leprel1 leprecan-like 1 protein_coding Danio_rerio
ENSMUSG00000038168 Leprel1 leprecan-like 1 protein_coding Mus_musculus

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