C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leprecan-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000039990 Leprel1-001 ENSMUSG00000038168 10090 - 16:25959288-26105784 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000039990
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000039990 2.211±1.54 2.976±0.29 3.156±1.12 0.394±0.05 1.405±0.65 4.060±0.70 0.550±0.04 27.687±5.76 0.522±0.37 3.857±0.20 0.845±0.40 7.113±2.48 7.849±3.80 0.222±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000DP CIL_0000DP_0002 CGP 16:25683763-26105784
CIL_0000DQ CIL_0000DQ_0002 CGP 16:25959288-26371841

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005506 IEA iron ion binding
GO:0005604 IDA basement membrane
GO:0005783 ISS endoplasmic reticulum
GO:0005794 ISS Golgi apparatus
GO:0008285 ISS negative regulation of cell proliferation
GO:0019511 ISS peptidyl-proline hydroxylation
GO:0019797 ISS procollagen-proline 3-dioxygenase activity
GO:0031418 IEA L-ascorbic acid binding
GO:0032963 ISS collagen metabolic process
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000319332 LEPREL1-001 protein_coding Homo_sapiens 0 2268
ENST00000427335 LEPREL1-002 protein_coding Homo_sapiens 0 1836
ENST00000467131 LEPREL1-008 retained_intron Homo_sapiens 0 488
ENST00000482780 LEPREL1-007 retained_intron Homo_sapiens 0 448
ENST00000490940 LEPREL1-009 retained_intron Homo_sapiens 0 346

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