C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tetratricopeptide repeat domain 39B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038172 Ttc39b 10090 - 4:83220300-83324255 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030205 Ttc39b-003 83259198-83324189 protein_coding
  ENSMUST00000048274 Ttc39b-002 83239810-83324239 protein_coding
  ENSMUST00000102823 Ttc39b-001 83220300-83324255 protein_coding
  ENSMUST00000143362 Ttc39b-004 83226419-83233170 retained_intron
  ENSMUST00000146519 Ttc39b-005 83247613-83266039 processed_transcript
  ENSMUST00000148811 Ttc39b-006 83259329-83279407 protein_coding
  ENSMUST00000150522 Ttc39b-007 83252986-83285169 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000048274ENSMUST00000102823ENSMUST00000143362
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000048274 N/A N/A N/A N/A 1.810±0.00 2.126±0.00 N/A N/A 0.406±0.00 N/A N/A 1.439±0.00 0.295±0.08 1.268±0.12
ENSMUST00000102823 1.464±0.39 2.400±0.77 1.796±0.04 0.818±0.41 2.099±1.05 6.880±1.17 2.040±0.22 1.352±0.32 3.720±2.92 4.580±0.76 0.437±0.19 2.678±1.66 0.300±0.16 1.621±0.75
ENSMUST00000143362 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.338±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00014A CIL_00014A_0002 CGP 4:82897920-83324255
CIL_000147 CIL_000147_0002 CGP 4:83220300-83467676

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000155158 TTC39B tetratricopeptide repeat domain 39B protein_coding Homo_sapiens

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