C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00014A_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000164946-ENSG00000155158 CGP 9606 9:14734666-15307360
GeneTranscriptPositionBiotype
ENSG00000155158 (TTC39B)
tetratricopeptide repeat domain 39B 		ENST00000297615 (TTC39B-201) 15170845-15307360 protein_coding
ENST00000380850 (TTC39B-202) 15170845-15307360 protein_coding
ENST00000380853 (TTC39B-003) 15171564-15188065 retained_intron
ENST00000505732 (TTC39B-006) 15186587-15307360 retained_intron
ENST00000506891 (TTC39B-004) 15249042-15307209 protein_coding
ENST00000507285 (TTC39B-007) 15171929-15232444 protein_coding
ENST00000507993 (TTC39B-005) 15171946-15250116 protein_coding
ENST00000512701 (TTC39B-001) 15163622-15307360 protein_coding
ENST00000582994 (TTC39B-010) 15214138-15232444 processed_transcript
ENSG00000164946 (FREM1)
FRAS1 related extracellular matrix 1 		ENST00000380875 (FREM1-005) 14737200-14910995 nonsense_mediated_decay
ENST00000380880 (FREM1-001) 14737396-14910430 protein_coding
ENST00000380894 (FREM1-002) 14737152-14779533 protein_coding
ENST00000422223 (FREM1-201) 14734666-14910995 protein_coding
ENST00000427623 (FREM1-006) 14737366-14774161 nonsense_mediated_decay
ENST00000466679 (FREM1-007) 14775935-14792801 processed_transcript
ENST00000485068 (FREM1-009) 14775823-14784634 processed_transcript
ENST00000486223 (FREM1-010) 14751705-14775905 processed_transcript
ENST00000497634 (FREM1-004) 14784272-14792884 retained_intron
ENSG00000214110 (LDHAP4)
lactate dehydrogenase A pseudogene 4 		ENST00000397561 (LDHAP4-001) 14921337-14922334 processed_pseudogene
ENSG00000215237 (RP11-54D18.2)
 ENST00000502889 (RP11-54D18.2-001) 14993312-15019729 unprocessed_pseudogene
ENSG00000232000 (CLCN3P1)
chloride channel, voltage-sensitive 3 pseudogene 1 		ENST00000423965 (CLCN3P1-001) 15034161-15048061 transcribed_unprocessed_pseudogene
ENST00000609203 (CLCN3P1-002) 14987302-15146401 processed_transcript
ENSG00000234297 (RP11-54D18.4)
 ENST00000422292 (RP11-54D18.4-001) 15055057-15056052 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Structures from Ensembl
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CIL_00014A_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000059049-ENSMUSG00000038172 CGP 10090 4:82897920-83324255
GeneTranscriptPositionBiotype
ENSMUSG00000059049 (Frem1)
Fras1 related extracellular matrix protein 1 		ENSMUST00000071708 (Frem1-201) 82897927-83021102 protein_coding
ENSMUST00000107230 (Frem1-001) 82897927-83052339 protein_coding
ENSMUST00000127886 (Frem1-002) 82938426-82970703 protein_coding
ENSMUST00000130889 (Frem1-005) 82915633-82924792 retained_intron
ENSMUST00000131102 (Frem1-003) 82992935-83052339 processed_transcript
ENSMUST00000133610 (Frem1-006) 82900564-82914434 processed_transcript
ENSMUST00000141841 (Frem1-004) 82936109-82940882 retained_intron
ENSMUST00000170248 (Frem1-202) 82897920-83052167 protein_coding
ENSMUSG00000083245 (Gm11185)
predicted gene 11185 		ENSMUST00000117732 (Gm11185-001) 83193988-83194994 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00014A_0001ENSG00000155158ENST00000297615ENST00000380850ENST00000380853ENST00000505732ENST00000506891ENST00000507285ENST00000507993ENST00000512701ENST00000582994ENSG00000164946ENST00000380875ENST00000380880ENST00000380894ENST00000422223ENST00000427623ENST00000466679ENST00000485068ENST00000486223ENST00000497634ENSG00000214110ENST00000397561ENSG00000215237ENST00000502889ENSG00000232000ENST00000423965ENST00000609203ENSG00000234297ENST00000422292CIL_00014A_0002ENSMUSG00000059049ENSMUST00000071708ENSMUST00000107230ENSMUST00000127886ENSMUST00000130889ENSMUST00000131102ENSMUST00000133610ENSMUST00000141841ENSMUST00000170248ENSMUSG00000083245ENSMUST00000117732
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00014A_0001ENSG00000155158ENST00000297615ENST00000380850ENST00000380853ENST00000505732ENST00000507993ENST00000512701ENSG00000164946ENST00000380875ENST00000380880ENST00000380894ENST00000422223ENST00000427623ENST00000466679ENSG00000214110ENST00000397561ENSG00000215237ENST00000502889ENSG00000232000ENST00000423965ENST00000609203ENSG00000234297ENST00000422292CIL_00014A_0002ENSMUSG00000059049ENSMUST00000071708ENSMUST00000107230ENSMUST00000127886ENSMUST00000131102ENSMUST00000133610ENSMUST00000141841ENSMUST00000170248ENSMUSG00000083245ENSMUST00000117732
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000155158 ENST00000297615 N/A N/A N/A N/A 1.929±0.00 N/A N/A 0.550±0.00 N/A 2.698±0.00 0.438±0.00 N/A 0.369±0.00 N/A
ENST00000380850 N/A N/A N/A N/A N/A N/A 0.265±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000380853 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.803±0.00 3.602±0.00
ENST00000505732 N/A N/A N/A N/A 2.792±0.00 2.551±0.00 N/A N/A 2.046±0.00 N/A N/A N/A N/A N/A
ENST00000506891 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507285 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507993 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.347±0.00 N/A N/A 3.040±1.16
ENST00000512701 0.953±0.00 0.988±0.00 2.494±0.00 0.548±0.00 N/A 1.125±0.00 0.284±0.00 2.592±0.00 0.485±0.00 1.950±0.09 1.324±0.00 1.871±1.09 0.277±0.21 0.822±0.36
ENST00000582994 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000164946 ENST00000380875 N/A N/A N/A N/A N/A N/A N/A 0.296±0.00 0.008±0.00 0.223±0.00 0.337±0.23 N/A 0.155±0.05 N/A
ENST00000380880 0.107±0.00 0.135±0.00 0.696±0.00 0.115±0.00 1.492±0.87 0.413±0.00 0.187±0.05 1.694±0.00 N/A N/A N/A 0.249±0.11 0.384±0.12 0.610±0.00
ENST00000380894 N/A N/A N/A 0.319±0.00 1.715±0.00 N/A 0.264±0.03 2.378±0.00 N/A 1.030±0.00 0.434±0.00 0.952±0.45 0.736±0.71 2.035±0.94
ENST00000422223 N/A N/A 0.810±0.00 N/A 0.323±0.00 N/A 0.099±0.00 N/A 0.357±0.00 0.073±0.00 N/A N/A 0.136±0.00 0.171±0.00
ENST00000427623 0.182±0.00 N/A N/A N/A N/A N/A 0.361±0.00 N/A 0.059±0.00 N/A N/A N/A N/A 1.102±0.00
ENST00000466679 N/A N/A N/A N/A N/A N/A N/A N/A 0.217±0.00 1.608±0.00 N/A N/A 0.521±0.00 N/A
ENST00000485068 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486223 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497634 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000214110 ENST00000397561 2.794±0.00 1.368±0.00 0.269±0.00 0.764±0.28 1.012±0.84 1.201±0.61 1.125±0.89 2.060±2.01 3.880±3.83 1.361±0.66 0.996±0.22 1.793±1.74 4.357±2.08 1.383±0.21
ENSG00000215237 ENST00000502889 0.035±0.00 N/A N/A 0.307±0.13 0.065±0.00 N/A 0.024±0.00 N/A N/A 0.082±0.00 0.008±0.00 0.099±0.06 0.091±0.04 0.741±0.05
ENSG00000232000 ENST00000423965 N/A N/A N/A N/A N/A N/A N/A 0.010±0.00 N/A N/A N/A N/A N/A N/A
ENST00000609203 0.006±0.00 0.096±0.00 0.254±0.00 0.047±0.00 0.115±0.05 0.005±0.00 0.033±0.00 0.035±0.00 0.232±0.00 0.030±0.00 N/A 0.018±0.00 0.020±0.00 0.252±0.04
ENSG00000234297 ENST00000422292 N/A N/A N/A N/A 0.132±0.00 0.011±0.00 0.010±0.00 N/A N/A N/A N/A 0.037±0.00 N/A 0.015±0.01
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000059049 ENSMUST00000071708 0.073±0.00 0.081±0.05 0.250±0.00 0.302±0.06 N/A 0.095±0.01 0.039±0.00 N/A 0.034±0.02 0.288±0.00 0.033±0.02 1.195±0.09 0.212±0.11 N/A
ENSMUST00000107230 0.157±0.00 N/A N/A 0.513±0.01 0.928±0.00 0.227±0.00 N/A 0.550±0.00 0.237±0.17 0.582±0.00 N/A 1.584±1.01 0.448±0.35 N/A
ENSMUST00000127886 N/A 0.085±0.04 N/A N/A N/A 0.149±0.10 0.028±0.01 N/A N/A N/A N/A 1.765±0.14 N/A N/A
ENSMUST00000130889 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131102 0.014±0.00 N/A N/A N/A N/A 0.162±0.00 N/A N/A 0.026±0.00 N/A 0.033±0.00 N/A N/A N/A
ENSMUST00000133610 N/A 0.385±0.00 N/A N/A N/A N/A N/A N/A 0.164±0.00 N/A N/A N/A N/A N/A
ENSMUST00000141841 N/A 0.210±0.10 N/A N/A N/A N/A N/A N/A 0.165±0.06 N/A N/A N/A N/A N/A
ENSMUST00000170248 0.153±0.11 0.117±0.02 0.597±0.03 0.637±0.00 1.484±0.68 0.188±0.00 N/A 1.054±0.12 0.135±0.05 0.586±0.09 0.032±0.00 2.302±0.99 0.438±0.33 N/A
ENSMUSG00000083245 ENSMUST00000117732 0.258±0.15 0.096±0.02 0.121±0.00 0.066±0.05 0.708±0.63 0.137±0.05 0.203±0.07 0.129±0.09 0.065±0.05 0.036±0.00 0.444±0.28 0.174±0.10 0.070±0.03 0.047±0.02

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