C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sperm associated antigen 4
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038180 Spag4 10090 + 2:156065175-156070617 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000038860 Spag4-001 156065244-156069501 protein_coding
  ENSMUST00000125996 Spag4-003 156065198-156070617 retained_intron
  ENSMUST00000131144 Spag4-008 156065553-156067528 nonsense_mediated_decay
  ENSMUST00000133511 Spag4-002 156065175-156069501 retained_intron
  ENSMUST00000136765 Spag4-004 156065227-156069224 retained_intron
  ENSMUST00000137966 Spag4-005 156065742-156068050 protein_coding
  ENSMUST00000138178 Spag4-007 156065437-156067322 nonsense_mediated_decay
  ENSMUST00000149139 Spag4-006 156066735-156069378 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000038860ENSMUST00000125996ENSMUST00000133511ENSMUST00000136765ENSMUST00000137966ENSMUST00000138178ENSMUST00000149139
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000038860 0.912±0.48 0.236±0.12 0.515±0.04 N/A 0.310±0.00 0.142±0.03 0.220±0.12 0.345±0.13 0.302±0.15 0.213±0.10 0.082±0.02 0.447±0.17 0.136±0.05 150.444±62.72
ENSMUST00000125996 0.231±0.00 0.069±0.03 N/A 0.988±0.16 0.118±0.04 0.106±0.05 0.038±0.02 0.092±0.05 0.071±0.03 0.079±0.00 0.034±0.02 0.177±0.11 0.056±0.03 N/A
ENSMUST00000133511 0.349±0.00 0.430±0.10 0.355±0.00 1.256±0.50 0.296±0.14 0.179±0.08 0.130±0.08 0.140±0.02 0.110±0.02 0.082±0.05 0.046±0.03 0.402±0.19 0.156±0.00 N/A
ENSMUST00000136765 0.352±0.00 N/A N/A 0.743±0.41 0.204±0.04 0.159±0.04 0.055±0.00 N/A N/A 0.085±0.01 N/A 0.209±0.15 0.035±0.01 N/A
ENSMUST00000137966 2.497±1.17 0.500±0.28 1.325±0.06 0.402±0.00 1.253±0.48 0.129±0.00 0.530±0.27 0.842±0.22 1.284±0.79 0.348±0.13 N/A 0.719±0.45 0.256±0.09 204.975±81.51
ENSMUST00000138178 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.187±0.00 N/A
ENSMUST00000149139 N/A N/A N/A N/A 0.479±0.00 N/A N/A N/A 0.687±0.16 N/A 0.027±0.00 N/A 0.072±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EI CIL_0008EI_0002 VISTA 2:155562263-156164147
CIL_0005FU CIL_0005FU_0002 CGP 2:156065175-156111965

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0031514 IEA motile cilium

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000061656 SPAG4 sperm associated antigen 4 protein_coding Homo_sapiens

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