C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sperm associated antigen 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000133511 Spag4-002 ENSMUSG00000038180 10090 + 2:156065175-156069501 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000133511
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000133511 0.349±0.00 0.430±0.10 0.355±0.00 1.256±0.50 0.296±0.14 0.179±0.08 0.130±0.08 0.140±0.02 0.110±0.02 0.082±0.05 0.046±0.03 0.402±0.19 0.156±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EI CIL_0008EI_0002 VISTA 2:155562263-156164147
CIL_0005FU CIL_0005FU_0002 CGP 2:156065175-156111965

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000374273 SPAG4-001 protein_coding Homo_sapiens 0 843
ENST00000454819 SPAG4-002 protein_coding Homo_sapiens 0 580
ENST00000468248 SPAG4-004 retained_intron Homo_sapiens 0 453
ENST00000498203 SPAG4-005 retained_intron Homo_sapiens 0 501

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