C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sperm associated antigen 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000038860 Spag4-001 ENSMUSG00000038180 10090 + 2:156065244-156069501 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000038860
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000038860 0.912±0.48 0.236±0.12 0.515±0.04 0.310±0.00 0.142±0.03 0.220±0.12 0.345±0.13 0.302±0.15 0.213±0.10 0.082±0.02 0.447±0.17 0.136±0.05 150.444±62.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008EI CIL_0008EI_0002 VISTA 2:155562263-156164147
CIL_0005FU CIL_0005FU_0002 CGP 2:156065175-156111965

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0031514 IEA motile cilium

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000374273 SPAG4-001 protein_coding Homo_sapiens 0 1282
ENST00000454819 SPAG4-002 protein_coding Homo_sapiens 0 736
ENST00000468248 SPAG4-004 retained_intron Homo_sapiens 0 453
ENST00000498203 SPAG4-005 retained_intron Homo_sapiens 0 501

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