C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chondroitin polymerizing factor 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038181 Chpf2 10090 + 5:24586741-24594395 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000088295 Chpf2-201 24586744-24594395 protein_coding
  ENSMUST00000121863 Chpf2-001 24586741-24592487 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000088295ENSMUST00000121863
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000088295 3.025±1.12 3.724±0.55 6.847±2.02 4.238±0.19 N/A 1.868±0.24 2.079±0.38 1.634±0.55 1.293±0.16 2.311±0.41 5.039±1.19 N/A 0.527±0.28
ENSMUST00000121863 10.355±2.79 14.769±3.05 N/A 6.072±0.00 10.722±1.78 5.247±1.00 N/A 4.037±0.39 3.108±0.78 7.989±1.27 6.608±2.02 7.389±4.68 1.315±0.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T1 CIL_0008T1_0002 VISTA 5:24041638-24646055
CIL_0007RX CIL_0007RX_0002 VISTA 5:24430554-25031843
CIL_0006DG CIL_0006DG_0003 CGP 5:24586741-24602012

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008150 ND biological_process
GO:0008152 IEA metabolic process
GO:0008376 IEA acetylgalactosaminyltransferase activity
GO:0032580 IEA Golgi cisterna membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059961 chpf2 chondroitin polymerizing factor 2 protein_coding Danio_rerio
ENSG00000033100 CHPF2 chondroitin polymerizing factor 2 protein_coding Homo_sapiens

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