C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chondroitin polymerizing factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000088295 Chpf2-201 ENSMUSG00000038181 10090 + 5:24586744-24594395 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartKidneyLiverLungOvaryTestisENSMUST00000088295
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Kidney Liver Lung Ovary Testis
ENSMUST00000088295 3.025±1.12 3.724±0.55 6.847±2.02 4.238±0.19 1.868±0.24 2.079±0.38 1.634±0.55 1.293±0.16 2.311±0.41 5.039±1.19 0.527±0.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T1 CIL_0008T1_0002 VISTA 5:24041638-24646055
CIL_0007RX CIL_0007RX_0002 VISTA 5:24430554-25031843
CIL_0006DG CIL_0006DG_0003 CGP 5:24586741-24602012

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008150 ND biological_process
GO:0008152 IEA metabolic process
GO:0008376 IEA acetylgalactosaminyltransferase activity
GO:0032580 IEA Golgi cisterna membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000035307 CHPF2-001 protein_coding Homo_sapiens 0 3009
ENST00000262188 SMARCD3-002 protein_coding Homo_sapiens 0 287
ENST00000356800 SMARCD3-201 protein_coding Homo_sapiens 0 287
ENST00000392811 SMARCD3-001 protein_coding Homo_sapiens 0 287
ENST00000465601 CHPF2-004 nonsense_mediated_decay Homo_sapiens 0 477
ENST00000469154 SMARCD3-004 nonsense_mediated_decay Homo_sapiens 0 287
ENST00000470588 SMARCD3-007 retained_intron Homo_sapiens 0 418
ENST00000472789 SMARCD3-014 retained_intron Homo_sapiens 0 396
ENST00000482173 CHPF2-003 protein_coding Homo_sapiens 0 298
ENST00000485592 SMARCD3-011 nonsense_mediated_decay Homo_sapiens 1e-30 137
ENST00000495645 CHPF2-002 protein_coding Homo_sapiens 0 2804
ENST00000496530 SMARCD3-015 processed_transcript Homo_sapiens 5e-23 111

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