Institute of Cardiovascular Regeneration Webtool Repository

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Accession	Transcript Name	Contained in Gene	Tax ID	Strand	Position	Biotype
Transcript Info
Description:	chondroitin polymerizing factor 2
ENSMUST00000088295	Chpf2-201	ENSMUSG00000038181	10090	+	5:24586744-24594395	protein_coding

Expression Patterns

Transcript ID	Adipose	Adrenal	Bladder	Brain	Colon	Heart	Kidney	Liver	Lung	Ovary	Testis
ENSMUST00000088295	3.025±1.12	3.724±0.55	6.847±2.02	4.238±0.19	1.868±0.24	2.079±0.38	1.634±0.55	1.293±0.16	2.311±0.41	5.039±1.19	0.527±0.28

Conserved Regions
Region ID	Sub-Region	Region Type	Position
CIL_0008T1	CIL_0008T1_0002	VISTA	5:24041638-24646055
CIL_0007RX	CIL_0007RX_0002	VISTA	5:24430554-25031843
CIL_0006DG	CIL_0006DG_0003	CGP	5:24586741-24602012

Gene Ontology
GO ID	Evidence Type	GO Description
GO:0003674	ND	molecular_function
GO:0008150	ND	biological_process
GO:0008152	IEA	metabolic process
GO:0008376	IEA	acetylgalactosaminyltransferase activity
GO:0032580	IEA	Golgi cisterna membrane

Homologs
ENSEMBL Accession	Gene Name	Biotype	Species	E-Value	Bit Score
ENST00000035307	CHPF2-001	protein_coding	Homo_sapiens	0	3009
ENST00000262188	SMARCD3-002	protein_coding	Homo_sapiens	0	287
ENST00000356800	SMARCD3-201	protein_coding	Homo_sapiens	0	287
ENST00000392811	SMARCD3-001	protein_coding	Homo_sapiens	0	287
ENST00000465601	CHPF2-004	nonsense_mediated_decay	Homo_sapiens	0	477
ENST00000469154	SMARCD3-004	nonsense_mediated_decay	Homo_sapiens	0	287
ENST00000470588	SMARCD3-007	retained_intron	Homo_sapiens	0	418
ENST00000472789	SMARCD3-014	retained_intron	Homo_sapiens	0	396
ENST00000482173	CHPF2-003	protein_coding	Homo_sapiens	0	298
ENST00000485592	SMARCD3-011	nonsense_mediated_decay	Homo_sapiens	1e-30	137
ENST00000495645	CHPF2-002	protein_coding	Homo_sapiens	0	2804
ENST00000496530	SMARCD3-015	processed_transcript	Homo_sapiens	5e-23	111

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