C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: chondroitin polymerizing factor 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000033100 CHPF2 9606 + 7:151232489-151238827 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000035307 CHPF2-001 151232499-151238827 protein_coding
  ENST00000465601 CHPF2-004 151235451-151237593 nonsense_mediated_decay
  ENST00000482173 CHPF2-003 151232489-151235269 protein_coding
  ENST00000495645 CHPF2-002 151232489-151238819 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000035307ENST00000495645
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000035307 6.705±0.00 7.997±0.00 5.556±2.28 3.130±2.04 N/A 3.051±1.92 3.497±1.93 2.121±0.68 3.027±1.68 13.141±8.83 21.349±3.17 7.953±2.82
ENST00000495645 4.896±0.00 8.835±0.00 N/A 4.012±0.00 4.871±0.00 N/A 7.583±0.00 4.052±0.00 7.058±0.00 5.203±0.00 7.290±1.32 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T1 CIL_0008T1_0001 VISTA 7:150668461-151272977
CIL_0007RX CIL_0007RX_0001 VISTA 7:151109813-151711422
CIL_0000KE CIL_0000KE_0002 CGP 7:151207837-151238827
CIL_0006DG CIL_0006DG_0002 CGP 7:151232489-151277896

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0005975 TAS carbohydrate metabolic process
GO:0008152 IEA metabolic process
GO:0008376 IEA acetylgalactosaminyltransferase activity
GO:0016020 IDA:IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016757 IEA transferase activity, transferring glycosyl groups
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0030204 TAS chondroitin sulfate metabolic process
GO:0030206 TAS chondroitin sulfate biosynthetic process
GO:0032580 IEA Golgi cisterna membrane
GO:0044281 TAS small molecule metabolic process
GO:0050510 IEA N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000059961 chpf2 chondroitin polymerizing factor 2 protein_coding Danio_rerio
ENSMUSG00000038181 Chpf2 chondroitin polymerizing factor 2 protein_coding Mus_musculus

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