C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chondroitin polymerizing factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121863 Chpf2-001 ENSMUSG00000038181 10090 + 5:24586741-24592487 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000121863
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000121863 10.355±2.79 14.769±3.05 6.072±0.00 10.722±1.78 5.247±1.00 4.037±0.39 3.108±0.78 7.989±1.27 6.608±2.02 7.389±4.68 1.315±0.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008T1 CIL_0008T1_0002 VISTA 5:24041638-24646055
CIL_0007RX CIL_0007RX_0002 VISTA 5:24430554-25031843
CIL_0006DG CIL_0006DG_0003 CGP 5:24586741-24602012

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008150 ND biological_process
GO:0008152 IEA metabolic process
GO:0008376 IEA acetylgalactosaminyltransferase activity
GO:0032580 IEA Golgi cisterna membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000035307 CHPF2-001 protein_coding Homo_sapiens 0 3000
ENST00000465601 CHPF2-004 nonsense_mediated_decay Homo_sapiens 0 477
ENST00000482173 CHPF2-003 protein_coding Homo_sapiens 0 298
ENST00000495645 CHPF2-002 protein_coding Homo_sapiens 0 2804

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