C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006DG_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000059961-ENSDARG00000019969 CGP 7955 7:44151953-44198569
GeneTranscriptPositionBiotype
ENSDARG00000019969 (smarcd3b)
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3b 		ENSDART00000006724 (smarcd3b-001) 44168385-44198569 protein_coding
ENSDART00000150146 (smarcd3b-002) 44181420-44198378 protein_coding
ENSDARG00000059961 (chpf2)
chondroitin polymerizing factor 2 		ENSDART00000083967 (chpf2-201) 44151953-44162641 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0006DG_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000033100-ENSG00000082014 CGP 9606 7:151232489-151277896
GeneTranscriptPositionBiotype
ENSG00000033100 (CHPF2)
chondroitin polymerizing factor 2 		ENST00000035307 (CHPF2-001) 151232499-151238827 protein_coding
ENST00000465601 (CHPF2-004) 151235451-151237593 nonsense_mediated_decay
ENST00000482173 (CHPF2-003) 151232489-151235269 protein_coding
ENST00000495645 (CHPF2-002) 151232489-151238819 protein_coding
ENSG00000082014 (SMARCD3)
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 		ENST00000262188 (SMARCD3-002) 151238973-151248973 protein_coding
ENST00000356800 (SMARCD3-201) 151238976-151276734 protein_coding
ENST00000392811 (SMARCD3-001) 151238973-151277452 protein_coding
ENST00000460431 (SMARCD3-010) 151242481-151246149 processed_transcript
ENST00000469154 (SMARCD3-004) 151238974-151275252 nonsense_mediated_decay
ENST00000470588 (SMARCD3-007) 151239008-151241492 retained_intron
ENST00000472103 (SMARCD3-012) 151241799-151243686 retained_intron
ENST00000472789 (SMARCD3-014) 151238981-151240208 retained_intron
ENST00000472988 (SMARCD3-005) 151240900-151248685 retained_intron
ENST00000477169 (SMARCD3-009) 151241958-151254478 processed_transcript
ENST00000485592 (SMARCD3-011) 151240422-151245513 nonsense_mediated_decay
ENST00000485610 (SMARCD3-006) 151241258-151248646 retained_intron
ENST00000489503 (SMARCD3-013) 151241908-151242792 processed_transcript
ENST00000491651 (SMARCD3-008) 151242721-151277896 protein_coding
ENST00000496530 (SMARCD3-015) 151238764-151239470 processed_transcript
ENSG00000272661 (RP4-548D19.3)
 ENST00000607902 (RP4-548D19.3-001) 151240399-151240972 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0006DG_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000038181-ENSMUSG00000028949 CGP 10090 5:24586741-24602012
GeneTranscriptPositionBiotype
ENSMUSG00000028949 (Smarcd3)
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 		ENSMUST00000030791 (Smarcd3-001) 24592622-24602012 protein_coding
ENSMUST00000123223 (Smarcd3-007) 24595164-24595846 retained_intron
ENSMUST00000140744 (Smarcd3-005) 24595867-24601900 retained_intron
ENSMUST00000143501 (Smarcd3-004) 24595644-24601935 retained_intron
ENSMUST00000144518 (Smarcd3-008) 24595746-24596989 retained_intron
ENSMUST00000144995 (Smarcd3-002) 24590818-24601976 retained_intron
ENSMUST00000145565 (Smarcd3-003) 24595735-24598938 retained_intron
ENSMUST00000147857 (Smarcd3-006) 24594695-24596849 retained_intron
ENSMUSG00000038181 (Chpf2)
chondroitin polymerizing factor 2 		ENSMUST00000088295 (Chpf2-201) 24586744-24594395 protein_coding
ENSMUST00000121863 (Chpf2-001) 24586741-24592487 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006DG_0001ENSDARG00000019969ENSDART00000006724ENSDART00000150146ENSDARG00000059961ENSDART00000083967CIL_0006DG_0002ENSG00000033100ENST00000035307ENST00000465601ENST00000482173ENST00000495645ENSG00000082014ENST00000262188ENST00000356800ENST00000392811ENST00000460431ENST00000469154ENST00000470588ENST00000472103ENST00000472789ENST00000472988ENST00000477169ENST00000485592ENST00000485610ENST00000489503ENST00000491651ENST00000496530ENSG00000272661ENST00000607902CIL_0006DG_0003ENSMUSG00000028949ENSMUST00000030791ENSMUST00000123223ENSMUST00000140744ENSMUST00000143501ENSMUST00000144518ENSMUST00000144995ENSMUST00000145565ENSMUST00000147857ENSMUSG00000038181ENSMUST00000088295ENSMUST00000121863
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006DG_0001ENSDARG00000019969ENSDART00000006724ENSDARG00000059961ENSDART00000083967CIL_0006DG_0002ENSG00000033100ENST00000035307ENST00000495645ENSG00000082014ENST00000262188ENST00000356800ENST00000470588ENST00000485610ENST00000489503ENSG00000272661ENST00000607902CIL_0006DG_0003ENSMUSG00000028949ENSMUST00000030791ENSMUST00000144995ENSMUSG00000038181ENSMUST00000088295ENSMUST00000121863
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000019969 ENSDART00000006724 N/A N/A N/A N/A N/A N/A N/A N/A 0.507±0.00 N/A N/A N/A N/A N/A
ENSDART00000150146 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000059961 ENSDART00000083967 N/A N/A N/A 2.243±0.44 N/A N/A 2.252±0.63 0.969±0.00 1.733±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000033100 ENST00000035307 6.705±0.00 7.997±0.00 N/A 5.556±2.28 3.130±2.04 N/A 3.051±1.92 3.497±1.93 2.121±0.68 3.027±1.68 N/A 13.141±8.83 21.349±3.17 7.953±2.82
ENST00000465601 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482173 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495645 4.896±0.00 8.835±0.00 N/A N/A 4.012±0.00 4.871±0.00 N/A 7.583±0.00 4.052±0.00 7.058±0.00 N/A 5.203±0.00 7.290±1.32 N/A
ENSG00000082014 ENST00000262188 N/A N/A N/A N/A 5.095±0.00 6.717±0.00 5.350±4.50 N/A 1.493±0.00 N/A 14.349±10.51 N/A N/A N/A
ENST00000356800 10.599±0.00 14.774±0.00 N/A 30.181±18.39 13.131±0.00 15.568±0.00 5.912±3.29 14.402±0.00 N/A 15.702±0.00 9.038±3.56 42.663±33.85 8.138±0.00 32.402±20.67
ENST00000392811 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460431 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469154 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470588 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.594±0.00 N/A N/A N/A
ENST00000472103 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472789 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472988 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477169 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485592 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485610 N/A N/A N/A N/A N/A N/A N/A 0.840±0.00 N/A N/A N/A N/A N/A N/A
ENST00000489503 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 29.884±0.00
ENST00000491651 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496530 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000272661 ENST00000607902 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 13.085±0.00 N/A 12.544±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028949 ENSMUST00000030791 N/A N/A 22.029±0.06 40.234±16.63 9.895±0.00 N/A 20.838±2.77 N/A N/A N/A 86.429±12.84 11.777±1.92 N/A 2.573±1.12
ENSMUST00000123223 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140744 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143501 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144518 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144995 5.565±1.60 5.055±0.69 N/A 6.915±0.00 13.597±0.00 2.937±0.66 N/A 1.842±0.32 1.846±0.70 3.333±0.60 N/A 6.735±1.49 5.605±3.55 1.124±0.90
ENSMUST00000145565 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147857 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000038181 ENSMUST00000088295 3.025±1.12 3.724±0.55 6.847±2.02 4.238±0.19 N/A 1.868±0.24 2.079±0.38 1.634±0.55 1.293±0.16 2.311±0.41 N/A 5.039±1.19 N/A 0.527±0.28
ENSMUST00000121863 10.355±2.79 14.769±3.05 N/A 6.072±0.00 10.722±1.78 5.247±1.00 N/A 4.037±0.39 3.108±0.78 7.989±1.27 N/A 6.608±2.02 7.389±4.68 1.315±0.39

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