C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeobox A9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038227 Hoxa9 10090 - 6:52223100-52231089 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000048680 Hoxa9-001 52223100-52227370 protein_coding
  ENSMUST00000114425 Hoxa9-002 52224121-52226189 protein_coding
  ENSMUST00000154641 Hoxa9-004 52223963-52231089 processed_transcript
  ENSMUST00000156540 Hoxa9-003 52224323-52230279 processed_transcript
  ENSMUST00000174115 Hoxa9-005 52228247-52230532 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000048680ENSMUST00000114425ENSMUST00000154641ENSMUST00000174115
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000048680 9.302±7.13 0.388±0.24 10.662±2.41 0.022±0.00 2.891±2.03 15.590±2.71 0.016±0.01 6.578±1.48 0.080±0.06 0.019±0.00 0.684±0.16 5.001±3.43 0.473±0.39 0.247±0.10
ENSMUST00000114425 8.270±2.89 0.744±0.41 9.569±0.00 0.026±0.00 7.471±3.24 18.191±6.10 0.021±0.00 13.850±3.92 0.214±0.14 0.041±0.02 2.482±0.49 5.156±1.60 2.440±2.16 0.664±0.58
ENSMUST00000154641 N/A N/A N/A 0.058±0.00 N/A N/A N/A N/A 0.080±0.00 N/A N/A N/A N/A 0.162±0.00
ENSMUST00000174115 6.648±5.37 N/A 7.204±0.00 0.017±0.00 0.671±0.45 11.152±1.86 N/A 6.252±0.00 0.055±0.04 0.029±0.01 0.711±0.04 3.278±1.43 0.330±0.10 0.183±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0003 UCNEbase 6:51462736-52602127
CIL_0008QL CIL_0008QL_0002 VISTA 6:51878169-52478777
CIL_000911 CIL_000911_0002 VISTA 6:51970433-52571615
CIL_000811 CIL_000811_0002 VISTA 6:52019082-52620287
CIL_00097P CIL_00097P_0002 VISTA 6:52142617-52744529
CIL_0003PA CIL_0003PA_0002 CGP 6:52214491-52231089

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IDA transcription factor complex
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007283 IGI spermatogenesis
GO:0007338 IGI single fertilization
GO:0008584 IGI male gonad development
GO:0009952 IGI anterior/posterior pattern specification
GO:0009954 IGI proximal/distal pattern formation
GO:0010468 IGI regulation of gene expression
GO:0019899 IEA enzyme binding
GO:0030879 IGI mammary gland development
GO:0035115 IGI embryonic forelimb morphogenesis
GO:0042118 IEA endothelial cell activation
GO:0043565 IEA sequence-specific DNA binding
GO:0045638 IDA negative regulation of myeloid cell differentiation
GO:0048706 IGI embryonic skeletal system development
GO:0060065 IGI uterus development
GO:0060216 IGI definitive hemopoiesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009461 hoxa9a homeo box A9a protein_coding Danio_rerio
ENSDARG00000056819 hoxa9b homeo box A9b protein_coding Danio_rerio
ENSDARG00000096510 hoxa9a Uncharacterized protein protein_coding Danio_rerio
ENSG00000078399 HOXA9 homeobox A9 protein_coding Homo_sapiens

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