C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox A9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000114425 Hoxa9-002 ENSMUSG00000038227 10090 - 6:52224121-52226189 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000114425
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000114425 8.270±2.89 0.744±0.41 9.569±0.00 0.026±0.00 7.471±3.24 18.191±6.10 0.021±0.00 13.850±3.92 0.214±0.14 0.041±0.02 2.482±0.49 5.156±1.60 2.440±2.16 0.664±0.58

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0003 UCNEbase 6:51462736-52602127
CIL_0008QL CIL_0008QL_0002 VISTA 6:51878169-52478777
CIL_000911 CIL_000911_0002 VISTA 6:51970433-52571615
CIL_000811 CIL_000811_0002 VISTA 6:52019082-52620287
CIL_00097P CIL_00097P_0002 VISTA 6:52142617-52744529
CIL_0003PA CIL_0003PA_0002 CGP 6:52214491-52231089

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IDA transcription factor complex
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007283 IGI spermatogenesis
GO:0007338 IGI single fertilization
GO:0008584 IGI male gonad development
GO:0009952 IGI anterior/posterior pattern specification
GO:0009954 IGI proximal/distal pattern formation
GO:0010468 IGI regulation of gene expression
GO:0030879 IGI mammary gland development
GO:0035115 IGI embryonic forelimb morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0045638 IDA negative regulation of myeloid cell differentiation
GO:0048706 IGI embryonic skeletal system development
GO:0060065 IGI uterus development
GO:0060216 IGI definitive hemopoiesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000153363 protein_coding Danio_rerio 0.00000000004 73
ENSDART00000057730 dbx2-201 protein_coding Danio_rerio 0.00000009 62
ENST00000303450 HOXC9-001 protein_coding Homo_sapiens 2.8026e-45 187
ENST00000312492 HOXC5-001 protein_coding Homo_sapiens 0.0000002 62
ENST00000343483 HOXA9-001 protein_coding Homo_sapiens 0 579
ENST00000357878 HMX3-001 protein_coding Homo_sapiens 0.00000001 66
ENST00000396345 HOXA9-003 protein_coding Homo_sapiens 0 1020
ENST00000470747 HOXA10-HOXA9-001 protein_coding Homo_sapiens 0 569
ENST00000487384 HOXA9-004 processed_transcript Homo_sapiens 0 577
ENST00000489695 HOXA9-005 processed_transcript Homo_sapiens 0 379
ENST00000497089 HOXA9-002 processed_transcript Homo_sapiens 0 418
ENST00000504557 HOXC9-003 processed_transcript Homo_sapiens 1.4013e-45 187
ENST00000508190 HOXC9-002 protein_coding Homo_sapiens 2.8026e-45 187
ENST00000513209 RP11-834C11.12-001 protein_coding Homo_sapiens 0.00000008 62

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