C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeobox A9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000078399 HOXA9 9606 - 7:27162435-27175180 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000343483 HOXA9-001 27162435-27165530 protein_coding
  ENST00000396345 HOXA9-003 27163521-27165526 protein_coding
  ENST00000465941 HOXA9-006 27163664-27175180 processed_transcript
  ENST00000487384 HOXA9-004 27163307-27170498 processed_transcript
  ENST00000489695 HOXA9-005 27163682-27169737 processed_transcript
  ENST00000497089 HOXA9-002 27162600-27169444 processed_transcript

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMusclePlacentaTestisENST00000343483ENST00000396345ENST00000487384ENST00000489695ENST00000497089
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Placenta Testis
ENST00000343483 3.169±0.00 0.717±0.00 N/A 2.712±0.00 3.199±1.78 N/A 10.255±0.00 0.764±0.00 N/A 2.744±1.69 1.517±0.00 0.602±0.47
ENST00000396345 N/A N/A N/A N/A N/A N/A N/A 0.105±0.00 N/A N/A N/A 0.851±0.00
ENST00000487384 N/A N/A N/A N/A N/A N/A N/A N/A 0.616±0.00 N/A N/A N/A
ENST00000489695 N/A N/A 0.058±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497089 N/A 1.079±0.00 N/A 1.808±0.00 N/A 0.078±0.00 6.101±0.00 N/A 0.047±0.00 N/A 2.480±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0002 UCNEbase 7:26506344-27606703
CIL_0008QL CIL_0008QL_0001 VISTA 7:26816432-27417045
CIL_000911 CIL_000911_0001 VISTA 7:26910239-27511438
CIL_000811 CIL_000811_0001 VISTA 7:26948649-27549872
CIL_00097P CIL_00097P_0001 VISTA 7:27075631-27678581
CIL_0003PA CIL_0003PA_0001 CGP 7:27153716-27175180
CIL_0006I0 CIL_0006I0_0002 CGP 7:27162435-27180013

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005667 IEA transcription factor complex
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0007283 IEA spermatogenesis
GO:0007338 IEA single fertilization
GO:0008584 IEA male gonad development
GO:0009952 IEA anterior/posterior pattern specification
GO:0009954 IEA proximal/distal pattern formation
GO:0010468 IEA regulation of gene expression
GO:0019899 IPI enzyme binding
GO:0030879 IEA mammary gland development
GO:0035115 IEA embryonic forelimb morphogenesis
GO:0042118 IMP endothelial cell activation
GO:0043565 IEA sequence-specific DNA binding
GO:0045638 ISS negative regulation of myeloid cell differentiation
GO:0048706 IEA embryonic skeletal system development
GO:0060065 IEA uterus development
GO:0060216 IEA definitive hemopoiesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009461 hoxa9a homeo box A9a protein_coding Danio_rerio
ENSDARG00000056819 hoxa9b homeo box A9b protein_coding Danio_rerio
ENSDARG00000096510 hoxa9a Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000038227 Hoxa9 homeobox A9 protein_coding Mus_musculus

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